Showing 200 of 457 results
Number of displayed results:
- MPRA in K562Homo sapiens K562, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfectionLab: Ryan Tewhey, JAXProject: ENCODE
- MPRA in K562Homo sapiens K562, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfectionLab: Ryan Tewhey, JAXProject: ENCODE
- MPRA in K562Homo sapiens K562, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfectionLab: Ryan Tewhey, JAXProject: ENCODE
- MPRA in K562Elements cloned into the lentiMPRA vector upstream of a minimal promoter, with barcode located in the 5' UTR of the reporter. Elements test potential HepG2, K562, and WTC11 enhancers and promoters of all protein-coding genes.Lab: Nadav Ahituv, UCSFProject: ENCODE
- STARR-seq in K562Homo sapiens K562 genetically modified (episome) using transient transfectionElements selection method: accessible genome regionsLab: Tim Reddy, DukeProject: ENCODE
- MPRA of PKLR locus in K562Elements cloned into the pGL4.11 vector upstream of the reporter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the PKLR promoter.
- MPRA of PKLR locus in K562Elements cloned into the pGL4.11 vector upstream of the reporter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the PKLR promoter.
- CRISPR cutting CRISPR screen of GATA1 locus in K562CRISPR screen targeting candidate CREs following survival
- CRISPR cutting CRISPR screen of GATA1 locus in K562CRISPR screen targeting candidate CREs following survival
- CRISPR cutting CRISPR screen of GATA1 locus in K562Control for CRISPR screen targeting candidate CREs
- CRISPR cutting CRISPR screen of GATA1 locus in K562Control for CRISPR screen targeting candidate CREs
- MPRA in K562Homo sapiens K562, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfectionElements selection method: sequence variantsLab: Ryan Tewhey, JAXProject: ENCODE
- CRISPRi Flow-FISH screen in K562 with HCR-FlowFISH readout of MYBHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociTiling modality: full tilingLab: Pardis Sabeti, BroadProject: ENCODE
- CRISPRi Flow-FISH screen in K562 with HCR-FlowFISH readout of MYBHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociTiling modality: full tilingLab: Pardis Sabeti, BroadProject: ENCODE
- CRISPRi Flow-FISH screen in K562 with HCR-FlowFISH readout of HBS1LHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociTiling modality: full tilingLab: Pardis Sabeti, BroadProject: ENCODE
- CRISPRi Flow-FISH screen in K562 with HCR-FlowFISH readout of HBS1LHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociTiling modality: full tilingLab: Pardis Sabeti, BroadProject: ENCODE
- CRISPRi Flow-FISH screen in K562 with HCR-FlowFISH readout of HBE1Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociTiling modality: full tilingLab: Pardis Sabeti, BroadProject: ENCODE
- CRISPRi Flow-FISH screen in K562 with HCR-FlowFISH readout of HBE1Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociTiling modality: full tilingLab: Pardis Sabeti, BroadProject: ENCODE
- CRISPRi Flow-FISH screen in K562 with HCR-FlowFISH readout of HBG2Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociTiling modality: full tilingLab: Pardis Sabeti, BroadProject: ENCODE
- CRISPRi Flow-FISH screen in K562 with HCR-FlowFISH readout of HBG2Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociTiling modality: full tilingLab: Pardis Sabeti, BroadProject: ENCODE
- CRISPRi Flow-FISH screen in K562 with HCR-FlowFISH readout of HBG1Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociTiling modality: full tilingLab: Pardis Sabeti, BroadProject: ENCODE
- CRISPRi Flow-FISH screen in K562 with HCR-FlowFISH readout of HBG1Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociTiling modality: full tilingLab: Pardis Sabeti, BroadProject: ENCODE
- CRISPRi proliferation screen in K562Functional characterization experiment for CRISPRi/dCas9-RYBP sparse-tiling proliferation screens at ~7500 cCREs around ~450 essential genes in K562Elements selection method: DNase hypersensitive sitesTiling modality: sparse peakLab: Will Greenleaf, StanfordProject: ENCODE
- CRISPRi proliferation screen in K562Functional characterization experiment for CRISPRi/dCas9-KRAB-WSR7EEE sparse-tiling proliferation screens at ~7500 cCREs around ~450 essential genes in K562Elements selection method: DNase hypersensitive sitesTiling modality: sparse peakLab: Will Greenleaf, StanfordProject: ENCODE
- CRISPRi proliferation screen in K562Functional characterization experiment for CRISPRi/dCas9-RYBP sparse-tiling proliferation screens at ~7500 cCREs around ~450 essential genes in K562Elements selection method: DNase hypersensitive sitesTiling modality: sparse peakLab: Will Greenleaf, StanfordProject: ENCODE
- CRISPRi proliferation screen in K562Functional characterization experiment for CRISPRi/dCas9-KRAB-WSR7EEE sparse-tiling proliferation screens at ~7500 cCREs around ~450 essential genes in K562Elements selection method: DNase hypersensitive sitesTiling modality: sparse peakLab: Will Greenleaf, StanfordProject: ENCODE
- CRISPRi proliferation screen in K562Functional characterization experiment for CRISPRi/dCas9-KRAB-MGA1-MGA2 sparse-tiling proliferation screens at ~7500 cCREs around ~450 essential genes in K562Elements selection method: DNase hypersensitive sitesTiling modality: sparse peakLab: Will Greenleaf, StanfordProject: ENCODE
- CRISPRi proliferation screen in K562Functional characterization experiment for dCas9-ZNF705-KRAB/CRISPRi tiling proliferation screens at a subset of cCREs around essential genesElements selection method: DNase hypersensitive sitesTiling modality: peak tilingLab: Will Greenleaf, StanfordProject: ENCODE
- CRISPRi proliferation screen in K562Functional characterization experiment for dCas9-RYBP/CRISPRi tiling proliferation screens at a subset of cCREs around essential genesElements selection method: DNase hypersensitive sitesTiling modality: peak tilingLab: Will Greenleaf, StanfordProject: ENCODE
- CRISPRi proliferation screen in K562Functional characterization experiment for dCas9-KRAB-WSR7EEE/CRISPRi tiling proliferation screens at a subset of cCREs around essential genesElements selection method: DNase hypersensitive sitesTiling modality: peak tilingLab: Will Greenleaf, StanfordProject: ENCODE
- CRISPRi proliferation screen in K562Functional characterization experiment for dCas9-KRAB/CRISPRi tiling proliferation screens at a subset of cCREs around essential genesElements selection method: DNase hypersensitive sitesTiling modality: peak tilingLab: Will Greenleaf, StanfordProject: ENCODE
- CRISPR dCas proliferation screen in K562Functional characterization experiment for dCas9 tiling proliferation screens at a subset of cCREs around essential genesElements selection method: DNase hypersensitive sitesTiling modality: peak tilingLab: Will Greenleaf, StanfordProject: ENCODE
- CRISPR cutting proliferation screen of CTCF locus in K562Functional characterization experiment for Cas9/CRISPR fine-mapping proliferation screens at hit and non-hit CTCF motifs in loop anchors (and their partner anchors) from the CTCF growth screenElements selection method: TF binding sitesLoci: CTCFTiling modality: peak tilingLab: Will Greenleaf, StanfordProject: ENCODE
- CRISPR cutting proliferation screen of CTCF locus in K562Functional characterization experiment for Cas9/CRISPR fine-mapping proliferation screens at hit and non-hit CTCF motifs in loop anchors (and their partner anchors) from the CTCF growth screenElements selection method: TF binding sitesLoci: CTCFTiling modality: peak tilingLab: Will Greenleaf, StanfordProject: ENCODE
- CRISPR cutting proliferation screen of CTCF locus in K562Functional characterization experiment for tiling, Cas9/CRISPRk proliferation screens at CTCF motifs in loop anchorsElements selection method: TF binding sitesLoci: CTCFTiling modality: sparse peakLab: Will Greenleaf, StanfordProject: ENCODE
- CRISPR cutting proliferation screen of CTCF locus in K562Functional characterization experiment for tiling, Cas9/CRISPRk proliferation screens at CTCF motifs in loop anchorsElements selection method: TF binding sitesLoci: CTCFTiling modality: sparse peakLab: Will Greenleaf, StanfordProject: ENCODE
- CRISPRi proliferation screen of CTCF locus in K562Functional characterization experiment for tiling, dCas9-KRAB/CRISPRi proliferation screens at CTCF motifs in loop anchorsElements selection method: TF binding sitesLoci: CTCFTiling modality: sparse peakLab: Will Greenleaf, StanfordProject: ENCODE
- CRISPRi proliferation screen of CTCF locus in K562Functional characterization experiment for tiling, dCas9-KRAB/CRISPRi proliferation screens at CTCF motifs in loop anchorsElements selection method: TF binding sitesLoci: CTCFTiling modality: sparse peakLab: Will Greenleaf, StanfordProject: ENCODE
- CRISPR dCas proliferation screen of CTCF locus in K562Functional characterization experiment for tiling, dCas9/CRISPRd proliferation screens at CTCF motifs in loop anchorsElements selection method: TF binding sitesLoci: CTCFTiling modality: sparse peakLab: Will Greenleaf, StanfordProject: ENCODE
- CRISPR dCas proliferation screen of CTCF locus in K562Functional characterization experiment for tiling, dCas9/CRISPRd proliferation screens at CTCF motifs in loop anchorsElements selection method: TF binding sitesLoci: CTCFTiling modality: sparse peakLab: Will Greenleaf, StanfordProject: ENCODE
- CRISPRa proliferation screen of CTCF locus in K562Functional characterization experiment for tiling, dCas9-VPR/CRISPRa proliferation screens at CTCF motifs in loop anchorsElements selection method: TF binding sitesLoci: CTCFTiling modality: sparse peakLab: Will Greenleaf, StanfordProject: ENCODE
- CRISPRa proliferation screen of CTCF locus in K562Functional characterization experiment for tiling, dCas9-VPR/CRISPRa proliferation screens at CTCF motifs in loop anchorsElements selection method: TF binding sitesLoci: CTCFTiling modality: sparse peakLab: Will Greenleaf, StanfordProject: ENCODE
- STARR-seq in K562Homo sapiens K562 genetically modified (episome) using transient transfectionElements selection method: accessible genome regionsLab: Tim Reddy, DukeProject: ENCODE
- STARR-seq in activated T-helper 17 cellMus musculus strain C57BL/6NJ activated T-helper 17 cell genetically modified (episome) using transient transfectionElements selection method: accessible genome regionsLab: Tim Reddy, DukeProject: ENCODE
- STARR-seq in activated CD4-positive, CD25-positive, alpha-beta regulatory T cellMus musculus strain C57BL/6NJ activated CD4-positive, CD25-positive, alpha-beta regulatory T cell genetically modified (episome) using transient transfectionElements selection method: accessible genome regionsLab: Tim Reddy, DukeProject: ENCODE
- STARR-seq in activated T-helper 17 cellMus musculus strain C57BL/6NJ activated T-helper 17 cell genetically modified (episome) using transient transfectionElements selection method: accessible genome regionsLab: Tim Reddy, DukeProject: ENCODE
- STARR-seq in activated T-helper 2 cellMus musculus strain C57BL/6NJ activated T-helper 2 cell genetically modified (episome) using transient transfectionElements selection method: accessible genome regionsLab: Tim Reddy, DukeProject: ENCODE
- STARR-seq in activated T-helper 1 cellMus musculus strain C57BL/6NJ activated T-helper 1 cell genetically modified (episome) using transient transfectionElements selection method: accessible genome regionsLab: Tim Reddy, DukeProject: ENCODE
- STARR-seq in activated naive CD4-positive, alpha-beta T cellMus musculus strain C57BL/6NJ activated naive CD4-positive, alpha-beta T cell genetically modified (episome) using transient transfectionElements selection method: accessible genome regionsLab: Tim Reddy, DukeProject: ENCODE
- CRISPR dCas proliferation screen of multiple loci in K562Tiling, dCas9/CRISPRd proliferation screen at the GATA1, MYB, and ZMYND8 loci
- CRISPR dCas proliferation screen of multiple loci in K562Tiling, dCas9/CRISPRd proliferation screen at the GATA1, MYB, and ZMYND8 loci
- CRISPRa proliferation screen of multiple loci in K562Tiling, dCas9-VPR/CRISPRa proliferation screen at the GATA1, MYB, and ZMYND8 loci
- CRISPRa proliferation screen of multiple loci in K562Tiling, dCas9-VPR/CRISPRa proliferation screen at the GATA1, MYB, and ZMYND8 loci
- CRISPR cutting proliferation screen of multiple loci in K562Tiling, Cas9/CRISPRk proliferation screen at the GATA1, MYB, and ZMYND8 loci
- CRISPR cutting proliferation screen of multiple loci in K562Tiling, Cas9/CRISPRk proliferation screen at the GATA1, MYB, and ZMYND8 loci
- CRISPRi proliferation screen of multiple loci in K562Tiling, dCas9-KRAB/CRISPRi proliferation screen at the GATA1, MYB, and ZMYND8 loci
- CRISPRi proliferation screen of multiple loci in K562Tiling, dCas9-KRAB/CRISPRi proliferation screen at the GATA1, MYB, and ZMYND8 loci
- CRISPRi proliferation screen in K562Homo sapiens K562, 14 days post-nucleic acid delivery time genetically modified (insertion) using transduction, using CRISPRi (pgRNA)Elements selection method: histone modificationsTiling modality: peak tilingLab: Bing Ren, UCSDProject: ENCODE
- CRISPRi proliferation screen in K562Homo sapiens K562, 0 days post-nucleic acid delivery time genetically modified (insertion) using transduction, using CRISPRi (pgRNA)Elements selection method: histone modificationsTiling modality: peak tilingLab: Bing Ren, UCSDProject: ENCODE
- CRISPR cutting proliferation screen of GATA1 locus in K562CRISPR screen targeting candidate CREs following survival
- CRISPR cutting proliferation screen of GATA1 locus in K562Control for CRISPR screen targeting candidate CREs
- CRISPR cutting proliferation screen of MYC locus in K562CRISPR screen targeting candidate CREs following survival
- CRISPR cutting FACS screen of MYC locus in K562 with endogenous protein Sort-seq readout of MYCCRISPR screen targeting candidate CREs following FACS high
- CRISPR cutting FACS screen of MYC locus in K562 with endogenous protein Sort-seq readout of MYCCRISPR screen targeting candidate CREs following FACS low
- MPRA in GM12878Homo sapiens GM12878, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfectionElements selection method: sequence variantsLab: Ryan Tewhey, JAXProject: ENCODE
- MPRA in K562Homo sapiens K562, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfectionElements selection method: sequence variantsLab: Ryan Tewhey, JAXProject: ENCODE
- MPRA of multiple loci in K562Homo sapiens K562, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection for multiple loci
- MPRA in K562Homo sapiens K562, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfectionElements selection method: DNase hypersensitive sites, histone modifications, synthetic elementsLab: Ryan Tewhey, JAXProject: ENCODE
- MPRA in K562Homo sapiens K562 genetically modified (episome) using transient transfectionElements selection method: sequence variantsLab: Ryan Tewhey, JAXProject: ENCODE
- MPRA in GM12878Homo sapiens GM12878 genetically modified (episome) using transient transfectionElements selection method: sequence variantsLab: Ryan Tewhey, JAXProject: ENCODE
- perturbation followed by snATAC-seq in GM12878CRISPRi perturbation of GM12878sLab: Will Greenleaf, StanfordProject: ENCODE
- perturbation followed by snATAC-seq in K562CRISPRi perturbation of K562sLab: Will Greenleaf, StanfordProject: ENCODE
- perturbation followed by snATAC-seq in K562CRISPRi perturbation of K562sLab: Will Greenleaf, StanfordProject: ENCODE
- perturbation followed by snATAC-seq in K562CRISPRi perturbation of K562sLab: Will Greenleaf, StanfordProject: ENCODE
- perturbation followed by snATAC-seq in K562CRISPRi perturbation of K562sLab: Will Greenleaf, StanfordProject: ENCODE
- perturbation followed by snATAC-seq in K562CRISPRi perturbation of K562sLab: Will Greenleaf, StanfordProject: ENCODE
- perturbation followed by snATAC-seq in K562CRISPRi perturbation of K562sLab: Will Greenleaf, StanfordProject: ENCODE
- perturbation followed by scRNA-seq in K562Homo sapiens K562 genetically modified (CRISPRi) using CRISPRLab: Jay Shendure, UWProject: ENCODE
- MPRA in K562Elements cloned into the lentiMPRA vector upstream of a minimal promoter, with barcode located in the 5' UTR of the reporter. Elements test K562 enhancers and promoters of all protein-coding genes.Elements selection method: DNase hypersensitive sitesLab: Nadav Ahituv, UCSFProject: ENCODE
- CRISPRi Flow-FISH screen of PPIF locus in Jurkat with PrimeFlow readout of PPIFHomo sapiens Jurkat genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for PPIF locusElements selection method: DNase hypersensitive sitesLoci: PPIFTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of PPIF locus in Jurkat with PrimeFlow readout of PPIFHomo sapiens Jurkat genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for PPIF locusElements selection method: DNase hypersensitive sitesLoci: PPIFTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of PPIF locus in Jurkat with PrimeFlow readout of PPIFHomo sapiens Jurkat genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for PPIF locusElements selection method: DNase hypersensitive sitesLoci: PPIFTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of PPIF locus in Jurkat with PrimeFlow readout of PPIFHomo sapiens Jurkat genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for PPIF locusElements selection method: DNase hypersensitive sitesLoci: PPIFTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of PPIF locus in Jurkat with PrimeFlow readout of PPIFHomo sapiens Jurkat genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for PPIF locusElements selection method: DNase hypersensitive sitesLoci: PPIFTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of PPIF locus in Jurkat with PrimeFlow readout of PPIFHomo sapiens Jurkat genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for PPIF locusElements selection method: DNase hypersensitive sitesLoci: PPIFTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of PPIF locus in Jurkat with PrimeFlow readout of PPIFHomo sapiens Jurkat genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for PPIF locusElements selection method: DNase hypersensitive sitesLoci: PPIFTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of PPIF locus in Jurkat with PrimeFlow readout of PPIFHomo sapiens Jurkat genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for PPIF locusElements selection method: DNase hypersensitive sitesLoci: PPIFTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of PPIF locus in Jurkat with PrimeFlow readout of PPIFHomo sapiens Jurkat genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for PPIF locusElements selection method: DNase hypersensitive sitesLoci: PPIFTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of PPIF locus in Jurkat with PrimeFlow readout of PPIFHomo sapiens Jurkat genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for PPIF locusElements selection method: DNase hypersensitive sitesLoci: PPIFTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of PPIF locus in Jurkat with PrimeFlow readout of PPIFHomo sapiens Jurkat genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for PPIF locusElements selection method: DNase hypersensitive sitesLoci: PPIFTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of PPIF locus in Jurkat with PrimeFlow readout of PPIFHomo sapiens Jurkat genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for PPIF locusElements selection method: DNase hypersensitive sitesLoci: PPIFTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of PPIF locus in GM12878 with PrimeFlow readout of PPIFHomo sapiens GM12878 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for PPIF locusElements selection method: DNase hypersensitive sitesLoci: PPIFTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of PPIF locus in GM12878 with PrimeFlow readout of PPIFHomo sapiens GM12878 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for PPIF locusElements selection method: DNase hypersensitive sitesLoci: PPIFTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of PPIF locus in GM12878 with PrimeFlow readout of PPIFHomo sapiens GM12878 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for PPIF locusElements selection method: DNase hypersensitive sitesLoci: PPIFTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of PPIF locus in GM12878 with PrimeFlow readout of PPIFHomo sapiens GM12878 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for PPIF locusElements selection method: DNase hypersensitive sitesLoci: PPIFTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of PPIF locus in GM12878 with PrimeFlow readout of PPIFHomo sapiens GM12878 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for PPIF locusElements selection method: DNase hypersensitive sitesLoci: PPIFTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of PPIF locus in GM12878 with PrimeFlow readout of PPIFHomo sapiens GM12878 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for PPIF locusElements selection method: DNase hypersensitive sitesLoci: PPIFTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of PPIF locus in THP-1 with PrimeFlow readout of PPIFHomo sapiens THP-1 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for PPIF locusElements selection method: DNase hypersensitive sitesLoci: PPIFTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of PPIF locus in THP-1 with PrimeFlow readout of PPIFHomo sapiens THP-1 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for PPIF locusElements selection method: DNase hypersensitive sitesLoci: PPIFTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of PPIF locus in THP-1 with PrimeFlow readout of PPIFHomo sapiens THP-1 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for PPIF locusElements selection method: DNase hypersensitive sitesLoci: PPIFTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of PPIF locus in THP-1 with PrimeFlow readout of PPIFHomo sapiens THP-1 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for PPIF locusElements selection method: DNase hypersensitive sitesLoci: PPIFTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of PPIF locus in THP-1 with PrimeFlow readout of PPIFHomo sapiens THP-1 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for PPIF locusElements selection method: DNase hypersensitive sitesLoci: PPIFTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of PPIF locus in THP-1 with PrimeFlow readout of PPIFHomo sapiens THP-1 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for PPIF locusElements selection method: DNase hypersensitive sitesLoci: PPIFTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of PPIF locus in THP-1 with PrimeFlow readout of PPIFHomo sapiens THP-1 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for PPIF locusElements selection method: DNase hypersensitive sitesLoci: PPIFTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of PPIF locus in THP-1 with PrimeFlow readout of PPIFHomo sapiens THP-1 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for PPIF locusElements selection method: DNase hypersensitive sitesLoci: PPIFTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of PPIF locus in THP-1 with PrimeFlow readout of PPIFHomo sapiens THP-1 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for PPIF locusElements selection method: DNase hypersensitive sitesLoci: PPIFTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of PPIF locus in THP-1 with PrimeFlow readout of PPIFHomo sapiens THP-1 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for PPIF locusElements selection method: DNase hypersensitive sitesLoci: PPIFTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of PPIF locus in THP-1 with PrimeFlow readout of PPIFHomo sapiens THP-1 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for PPIF locusElements selection method: DNase hypersensitive sitesLoci: PPIFTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of PPIF locus in THP-1 with PrimeFlow readout of PPIFHomo sapiens THP-1 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for PPIF locusElements selection method: DNase hypersensitive sitesLoci: PPIFTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi proliferation screen in K562CRISPR-dCas9-based epigenomic regulatory element screening (CERES) technology to screen a subset of putative non-coding regulatory elements identified in human K562 leukemia cells from whole genome discovery screen (validation). This validation screen was performed in K562 leukemia cellsTiling modality: sparse peakLab: Tim Reddy, DukeProject: ENCODE
- CRISPRi proliferation screen in K562CRISPR-dCas9-based epigenomic regulatory element screening (CERES) technology to screen all >100,000 putative non-coding regulatory elements defined by open chromatin sites in human K562 leukemia cells for their role in regulating essential cellular processes (whole genome).Tiling modality: peak tilingLab: Tim Reddy, DukeProject: ENCODE
- perturbation followed by scRNA-seq in K562Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA)Lab: Tim Reddy, DukeProject: ENCODELibrary construction platform: 10X Genomics Chromium Controller
- STARR-seq in K562Homo sapiens K562 genetically modified (episome) using transient transfectionLab: Tim Reddy, DukeProject: ENCODE
- CRISPRi Flow-FISH screen in K562 with HCR-FlowFISH readout of CAPRIN1CAPRIN1Tiling modality: full tilingLab: Pardis Sabeti, BroadProject: ENCODE
- CRISPRi Flow-FISH screen in K562 with HCR-FlowFISH readout of CAPRIN1CAPRIN1Tiling modality: full tilingLab: Pardis Sabeti, BroadProject: ENCODE
- CRISPRi Flow-FISH screen in K562 with HCR-FlowFISH readout of CATCATTiling modality: full tilingLab: Pardis Sabeti, BroadProject: ENCODE
- CRISPRi Flow-FISH screen in K562 with HCR-FlowFISH readout of CATCATTiling modality: full tilingLab: Pardis Sabeti, BroadProject: ENCODE
- CRISPRi Flow-FISH screen in K562 with HCR-FlowFISH readout of PVT1PVT1Tiling modality: full tilingLab: Pardis Sabeti, BroadProject: ENCODE
- CRISPRi Flow-FISH screen in K562 with HCR-FlowFISH readout of MYCMYCTiling modality: full tilingLab: Pardis Sabeti, BroadProject: ENCODE
- CRISPRi Flow-FISH screen in K562 with HCR-FlowFISH readout of PVT1PVT1Tiling modality: full tilingLab: Pardis Sabeti, BroadProject: ENCODE
- CRISPRi Flow-FISH screen in K562 with HCR-FlowFISH readout of MYCMYCTiling modality: full tilingLab: Pardis Sabeti, BroadProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of WASHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of WASHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of WASHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of WASHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of WASHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of WASHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of FARSAHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of FARSAHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of FARSAHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of FARSAHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of FARSAHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of FARSAHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of ZNF385AHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of ZNF385AHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of ZNF385AHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of ZNF385AHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of ZNF385AHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of ZNF385AHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of multiple loci in K562 with PrimeFlow readout of WDR83OSHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of multiple loci in K562 with PrimeFlow readout of WDR83OSHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of multiple loci in K562 with PrimeFlow readout of WDR83OSHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of multiple loci in K562 with PrimeFlow readout of WDR83OSHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of multiple loci in K562 with PrimeFlow readout of WDR83OSHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of multiple loci in K562 with PrimeFlow readout of WDR83OSHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of TNPO2Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of TNPO2Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of TNPO2Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of TNPO2Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of TNPO2Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of TNPO2Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of TIMM17BHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of TIMM17BHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of TIMM17BHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of TIMM17BHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of TIMM17BHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of TIMM17BHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of SUV39H1Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of SUV39H1Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of SUV39H1Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of SUV39H1Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of SUV39H1Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of SUV39H1Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of SLC38A5Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of SLC38A5Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of SLC38A5Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of SLC38A5Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of SLC38A5Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of SLC38A5Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of SLC35A2Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of SLC35A2Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of SLC35A2Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of SLC35A2Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of SLC35A2Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- Flow-FISH CRISPR screen of multiple loci in K562 with PrimeFlow readout of SLC35A2Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of multiple loci in K562 with PrimeFlow readout of SEC61A1Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of multiple loci in K562 with PrimeFlow readout of SEC61A1Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of multiple loci in K562 with PrimeFlow readout of SEC61A1Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of multiple loci in K562 with PrimeFlow readout of SEC61A1Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of multiple loci in K562 with PrimeFlow readout of SEC61A1Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of multiple loci in K562 with PrimeFlow readout of SEC61A1Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of multiple loci in K562 with PrimeFlow readout of RPN1Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of multiple loci in K562 with PrimeFlow readout of RPN1Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of multiple loci in K562 with PrimeFlow readout of RPN1Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of multiple loci in K562 with PrimeFlow readout of RPN1Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of multiple loci in K562 with PrimeFlow readout of RPN1Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of multiple loci in K562 with PrimeFlow readout of RPN1Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of multiple loci in K562 with PrimeFlow readout of RNASEH2AHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of multiple loci in K562 with PrimeFlow readout of RNASEH2AHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of multiple loci in K562 with PrimeFlow readout of RNASEH2AHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of multiple loci in K562 with PrimeFlow readout of RNASEH2AHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of multiple loci in K562 with PrimeFlow readout of RNASEH2AHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of multiple loci in K562 with PrimeFlow readout of RNASEH2AHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of multiple loci in K562 with PrimeFlow readout of RAD23AHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of multiple loci in K562 with PrimeFlow readout of RAD23AHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of multiple loci in K562 with PrimeFlow readout of RAD23AHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of multiple loci in K562 with PrimeFlow readout of RAD23AHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of multiple loci in K562 with PrimeFlow readout of RAD23AHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE
- CRISPRi Flow-FISH screen of multiple loci in K562 with PrimeFlow readout of RAD23AHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociElements selection method: DNase hypersensitive sitesLoci: BAX, BCAT2, TRIR, CALR, CNBP, COPZ1, DHPS, DNASE2, EBP, FTL, FUT1, GATA1, H1FX, HDAC6, HNRNPA1, ITGA5, JUNB, KLF1, LYL1, NFE2, NUCB1, OTUD5, PIM2, PLP2, PPP1R15A, PQBP1, PRDX2, RAB7A, RAD23A, RNASEH2A, RPN1, SEC61A1, WDR83OSTiling modality: peak tilingLab: Jesse Engreitz, StanfordProject: ENCODE