Functional Characterization Experiment summary for ENCSR837IHU
doi:10.17989/ENCSR837IHU
Summary
- Status
- revoked
- Assay
- Flow-FISH CRISPR screen
- Biosample summary
- Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple loci
- Biosample Type
- cell line
- Tiling modality
- peak tiling
- Examined loci
- SLC38A5 (10-20%)
- CRISPR screen readout
- PrimeFlow
- Replication type
- isogenic
- Nucleic acid type
- DNA
- Size range
- 200-210
Attribution
ENCODE4 project
- Lab
- Jesse Engreitz, Stanford
- Award
- UM1HG009436 (Will Greenleaf, Stanford)
- Project
- ENCODE
- Aliases
- jesse-engreitz:CRISPRiFlowFISH-K562-SLC38A5-binB_funccharexp
- Date released
- January 7, 2021
- Submitter comment
- This dataset was revoked because it did not pass the lab's QC assessments.
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Library |
|---|---|---|---|---|---|
| 2 | 1 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS918OCE | ENCGM924EDC, ENCGM912CXW | ENCLB966GON |
| 2 | 2 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS918OCE | ENCGM924EDC, ENCGM912CXW | ENCLB152OHK |
| 1 | 3 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS839VPO | ENCGM924EDC, ENCGM912CXW | ENCLB324GZM |
| 2 | 4 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS918OCE | ENCGM924EDC, ENCGM912CXW | ENCLB866POZ |
| 1 | 2 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS839VPO | ENCGM924EDC, ENCGM912CXW | ENCLB226VJH |
| 1 | 4 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS839VPO | ENCGM924EDC, ENCGM912CXW | ENCLB037XKN |
| 1 | 1 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS839VPO | ENCGM924EDC, ENCGM912CXW | ENCLB559NJN |
| 2 | 3 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS918OCE | ENCGM924EDC, ENCGM912CXW | ENCLB278ZDQ |