Tutorials & Workshops

ENCODE Research Applications & Users Meetings

The ENCODE Research Applications and Users Meeting is a NHGRI-sponsored, 2.5-day event featuring:

  • Tutorials on how to query and use ENCODE data and ENCODE uniform processing pipelines in scientific research
  • Scientific presentations on research using ENCODE data by non-ENCODE Consortium members
  • Presentations from ENCODE Consortium members



Tutorials and Presentations

Sept 30 - Oct 2, 2020 Virtual event ENCODE 2020 Research Applications & Users Meeting
July 8 - 10, 2019 Seattle, WA, USA ENCODE 2019 Research Applications & Users Meeting
June 8 - 10, 2016 Palo Alto, CA, USA ENCODE 2016 Research Applications & Users Meeting
June 29 - July 1, 2015 Potomac, MD, USA ENCODE 2015 Research Applications & Users Meeting

Upcoming ENCODE Workshops 



Workshop topic

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Previous ENCODE Workshops

The ENCODE Consortium hosts interactive workshops at conferences around the world in order to teach participants how to navigate the ENCODE Encylopedia to find and utilize data as well as how to run ENCODE uniform processing pipelines.





Oct 27-30, 2020 Virtual event American Society of Human Genetics (ASHG) 2020 Annual Meeting Video playlist
May 20, 2020 Virtual event Broad ENCODE Data Utilization Workshop Workshop recordings
June 9-11, 2019 Barcelona, Spain (CRG) Long read RNA-seq  n/a
March 17-21, 2019 Banff, Alberta Keystone Symposia on Molecular and Cellular Biology 2019 (3D Genome: Gene Regulation and Disease)

ENCODE Overview

Introduction to the ENCODE portal

The ENCODE Registry of ccREs and SCREEN

October 16, 2018 San Diego, California American Society of Human Genetics (ASHG) 2018 Annual Meeting

ENCODE Data Utilization Workshop

October 17, 2017 Orlando, Florida American Society of Human Genetics (ASHG) 2017 Annual Meeting Navigating the ENCODE Encyclopedia: Exploring Candidate Regulatory Elements, Linked Genes, and Genetic Variation with SCREEN
October 18 - 22, 2016 Vancouver, British Columbia American Society of Human Genetics (ASHG) 2016 Annual Meeting

Tutorial: ENCODE Uniform Processing Pipelines and DNA Nexus

3D Genome Organization and Chromatin Interaction

March 21, 2016 Whistler, British Columbia Keystone Symposia on Molecular and Cellular Biology 2016 Find and Visualize ENCODE Data
January 10, 2016 San Francisco, California Asia Pacific Bioinformatics Conference 2016 ENCODE Short Course
October 6 - 10, 2015 Baltimore, Maryland American Society of Human Genetics (ASHG) 2015 Annual Meeting Searching, Browsing and Downloading ENCODE Data
April 2, 2015 Keystone, Colorado Keystone Symposia on Molecular and Cellular Biology 2015

ENCODE Introduction

ENCODE Workshop Introduction

Accessing Data and Metadata through the ENCODE Portal

Large-scale Epigenomic Chromatin State and Imputation

Additional ENCODE resources