Tutorials & Workshops

ENCODE Research Applications & Users Meetings

The ENCODE Research Applications and Users Meeting is a NHGRI-sponsored, 2.5-day event featuring:

• Tutorials on how to query and use ENCODE data and ENCODE uniform processing pipelines in scientific research
• Scientific presentations on research using ENCODE data by non-ENCODE Consortium members
• Presentations from ENCODE Consortium members

Date	Location	Tutorials and Presentations
Sept 30 - Oct 2, 2020	Virtual event	ENCODE 2020 Research Applications & Users Meeting
July 8 - 10, 2019	Seattle, WA, USA	ENCODE 2019 Research Applications & Users Meeting
June 8 - 10, 2016	Palo Alto, CA, USA	ENCODE 2016 Research Applications & Users Meeting
June 29 - July 1, 2015	Potomac, MD, USA	ENCODE 2015 Research Applications & Users Meeting

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Upcoming ENCODE Workshops 

Date	Location	Workshop topic
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Previous ENCODE Workshops

The ENCODE Consortium hosts interactive workshops at conferences around the world in order to teach participants how to navigate the ENCODE Encylopedia to find and utilize data as well as how to run ENCODE uniform processing pipelines.

Date	Location	Conference	Presentation
Oct 27-30, 2020	Virtual event	American Society of Human Genetics (ASHG) 2020 Annual Meeting	Video playlist
May 20, 2020	Virtual event	Broad ENCODE Data Utilization Workshop	Workshop recordings
June 9-11, 2019	Barcelona, Spain (CRG)	Long read RNA-seq	n/a
March 17-21, 2019	Banff, Alberta	Keystone Symposia on Molecular and Cellular Biology 2019 (3D Genome: Gene Regulation and Disease)	ENCODE Overview Introduction to the ENCODE portal The ENCODE Registry of ccREs and SCREEN
October 16, 2018	San Diego, California	American Society of Human Genetics (ASHG) 2018 Annual Meeting	ENCODE Data Utilization Workshop Brief introduction to the ENCODE project Introduction to the ENCODE portal for ENCODE data Introduction to the SCREEN site for ENCODE candidate cis-Regulatory Elements ENCORE: Using the ENCODE RNA binding protein resource to study RNA processing regulation Aggregating hundreds of ENCODE epigenomic annotations to predict cell-state-specific regulatory elements
October 17, 2017	Orlando, Florida	American Society of Human Genetics (ASHG) 2017 Annual Meeting	Navigating the ENCODE Encyclopedia: Exploring Candidate Regulatory Elements, Linked Genes, and Genetic Variation with SCREEN
October 18 - 22, 2016	Vancouver, British Columbia	American Society of Human Genetics (ASHG) 2016 Annual Meeting	Tutorial: ENCODE Uniform Processing Pipelines and DNA Nexus 3D Genome Organization and Chromatin Interaction
March 21, 2016	Whistler, British Columbia	Keystone Symposia on Molecular and Cellular Biology 2016	Find and Visualize ENCODE Data
January 10, 2016	San Francisco, California	Asia Pacific Bioinformatics Conference 2016	ENCODE Short Course
October 6 - 10, 2015	Baltimore, Maryland	American Society of Human Genetics (ASHG) 2015 Annual Meeting	Searching, Browsing and Downloading ENCODE Data
April 2, 2015	Keystone, Colorado	Keystone Symposia on Molecular and Cellular Biology 2015	ENCODE Introduction ENCODE Workshop Introduction Accessing Data and Metadata through the ENCODE Portal Large-scale Epigenomic Chromatin State and Imputation

Additional ENCODE resources

• ENCODE tutorials available from NHGRI
• Introductory ENCODE publications
• ENCODE at UCSC (2003-2014) Resources and FAQs
• How to view ENCODE data in Ensembl