Asia Pacific Bioinformatics Conference - ENCODE Short Course
Sunday January 10th 2016, 9:00AM - 12:30PM
We plan a highly interactive workshop, with ample time for hands-on exercises and your questions.
Workshop Agenda
- Introduction to ENCODE and the ENCODE DCC
- How to find ENCODE results on the ENCODE Portal
- How to visualize and download ENCODE data
- Data formats and availability
- Standard ENCODE data processing pipelines and how to replicate ENCODE analyses on your own data
All slides and materials from the workshop will be added to this page.
Instructions for setting up your DNAnexus environment to run ENCODE pipelines are here:
Prepare to run web-based pipelines
For questions or more information contact:
J. Michael Cherry, Ph.D.
E-mail: cherry@stanford.edu
No. |
Presentation Title |
Presenter |
Organization |
Additional materials |
1 | Introduction to ENCODE and the ENCODE DCC | J. Michael Cherry | ENCODE DCC, Stanford University | Slides |
2 | Searching the ENCODE Portal | Aditi Narayanan | ENCODE DCC, Stanford University | Slides |
3 |
Data Access, Availability, and Processing at the ENCODE Portal |
J. Seth Strattan |
ENCODE DCC, Stanford University |
|
4 |
Closing |
J. Michael Cherry |
ENCODE DCC, Stanford University |