Publications using ENCODE data

ENCODE-funded publications

These are publications by members of the ENCODE, mouse ENCODE, and modENCODE consortia.

Community publications

These are publications that use ENCODE, published by authors not funded by ENCODE, as well as papers that use modENCODE data, published by authors not funded by modENCODE. The ENCODE project tracks these papers to assess impact of the resource and to provide examples of how the resource can be used. Please contact Mike Pazin at NHGRI to suggest publications to add to these lists.

Supplemental sites

2014 ENCODE mouse-human comparison publications

A supplemental site describes the publications and supporting materials.

2014 modENCODE/ENCODE worm-fly-human comparison publications

A supplemental site describes the publications and supporting materials.

2012 ENCODE integrative analysis publications

A description of the ENCODE project, data production, data display, and data download has been published previously in the article, A user's guide to the encyclopedia of DNA elements (ENCODE). The resources in this article, and follow-on analyses, are described in detail in an extensive package of ENCODE integrative analysis publications and on a Nature microsite.

A supplemental page describes additional resources associated with these publications.