Functional Characterization Experiment summary for ENCSR505BCW
doi:10.17989/ENCSR505BCW
Summary
- Status
- released
- Assay
- Flow-FISH CRISPR screen
- Biosample summary
- Homo sapiens GM12878 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for PPIF locus
- Biosample Type
- cell line
- Perturbation type
- CRISPRi
- Tiling modality
- peak tiling
- Examined loci
- PPIF (90-100%)
- CRISPR screen readout
- PrimeFlow
- Replication type
- isogenic
- Nucleic acid type
- DNA
- Size range
- 200-210
- Platform
- Illumina HiSeq 4000
- Elements references
Attribution
ENCODE4 project
- Lab
- Jesse Engreitz, Stanford
- Award
- UM1HG009436 (Will Greenleaf, Stanford)
- Project
- ENCODE
- Aliases
- jesse-engreitz:CRISPRiFlowFISH-GM12878-False-PPIF-binF_funccharexp
- Date released
- May 7, 2022
- Functional Characterization Series
- ENCSR194SMN
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Library |
|---|---|---|---|---|---|
| 2 | 3 | Homo sapiens GM12878 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS301LMV | ENCGM772UBR, ENCGM324JGL | ENCLB812TAN |
| 2 | 2 | Homo sapiens GM12878 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS301LMV | ENCGM772UBR, ENCGM324JGL | ENCLB111MPJ |
| 1 | 1 | Homo sapiens GM12878 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS896YMC | ENCGM772UBR, ENCGM324JGL | ENCLB394CBV |
| 1 | 4 | Homo sapiens GM12878 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS896YMC | ENCGM772UBR, ENCGM324JGL | ENCLB091DAI |
| 1 | 2 | Homo sapiens GM12878 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS896YMC | ENCGM772UBR, ENCGM324JGL | ENCLB843OYF |
| 1 | 3 | Homo sapiens GM12878 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS896YMC | ENCGM772UBR, ENCGM324JGL | ENCLB299KLA |
| 2 | 1 | Homo sapiens GM12878 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS301LMV | ENCGM772UBR, ENCGM324JGL | ENCLB423BYJ |
| 2 | 4 | Homo sapiens GM12878 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS301LMV | ENCGM772UBR, ENCGM324JGL | ENCLB932EMC |