Functional Characterization Experiment summary for ENCSR469XHF
doi:10.17989/ENCSR469XHF
Summary
- Status
- revoked
- Assay
- Flow-FISH CRISPR screen
- Biosample summary
- Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple loci
- Biosample Type
- cell line
- Tiling modality
- peak tiling
- Examined loci
- SUV39H1 (55-65%)
- CRISPR screen readout
- PrimeFlow
- Replication type
- isogenic
- Nucleic acid type
- DNA
- Size range
- 200-210
Attribution
ENCODE4 project
- Lab
- Jesse Engreitz, Stanford
- Award
- UM1HG009436 (Will Greenleaf, Stanford)
- Project
- ENCODE
- Aliases
- jesse-engreitz:CRISPRiFlowFISH-K562-SUV39H1-binD_funccharexp
- Date released
- January 7, 2021
- Submitter comment
- This dataset was revoked because it did not pass the lab's QC assessments.
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Library |
|---|---|---|---|---|---|
| 1 | 1 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS737HNW | ENCGM924EDC, ENCGM912CXW | ENCLB149GRH |
| 3 | 1 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS148KHR | ENCGM924EDC, ENCGM912CXW | ENCLB090JMD |
| 1 | 4 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS737HNW | ENCGM924EDC, ENCGM912CXW | ENCLB688LZO |
| 3 | 2 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS148KHR | ENCGM924EDC, ENCGM912CXW | ENCLB568JVD |
| 3 | 4 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS148KHR | ENCGM924EDC, ENCGM912CXW | ENCLB338KHW |
| 2 | 2 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS718FWR | ENCGM924EDC, ENCGM912CXW | ENCLB567IRL |
| 2 | 3 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS718FWR | ENCGM924EDC, ENCGM912CXW | ENCLB460TVQ |
| 4 | 2 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS804SZB | ENCGM924EDC, ENCGM912CXW | ENCLB854SPB |
| 4 | 4 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS804SZB | ENCGM924EDC, ENCGM912CXW | ENCLB942OMN |
| 1 | 2 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS737HNW | ENCGM924EDC, ENCGM912CXW | ENCLB295FEM |
| 3 | 3 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS148KHR | ENCGM924EDC, ENCGM912CXW | ENCLB468HRC |
| 4 | 3 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS804SZB | ENCGM924EDC, ENCGM912CXW | ENCLB964DEC |
| 4 | 1 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS804SZB | ENCGM924EDC, ENCGM912CXW | ENCLB656TFN |
| 1 | 3 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS737HNW | ENCGM924EDC, ENCGM912CXW | ENCLB826USY |
| 2 | 1 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS718FWR | ENCGM924EDC, ENCGM912CXW | ENCLB755GLA |
| 2 | 4 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS718FWR | ENCGM924EDC, ENCGM912CXW | ENCLB871WAJ |