Functional Characterization Experiment summary for ENCSR312UQM
doi:10.17989/ENCSR312UQM
Supersedes ENCSR806PQN
Summary
- Status
- released
- Assay
- STARR-seq
- Biosample summary
- Homo sapiens K562 genetically modified (episome) using transient transfection
- Biosample Type
- cell line
- Replication type
- isogenic
- Nucleic acid type
- RNA
- Size range
- >200
- Extraction method
- RNeasy
- Strand specificity
- unstranded
- Platform
- Illumina NovaSeq 6000
- Controls
- Elements references
Attribution
ENCODE4 project
- Lab
- Tim Reddy, Duke
- Award
- UM1HG009428 (Tim Reddy, Duke)
- Project
- ENCODE
- Aliases
- tim-reddy:encode4-atacstarr-ultradeep-rna, tim-reddy:k562-atacstarr-ultradeep-output
- Date released
- March 21, 2023
- Submitter comment
- The document /documents/331c860b-1f34-4c9a-86ad-50ed1bf02d94/ was previously attached to this experiment. It is now deprecated. Please refer to the currently attached documents.
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Library |
|---|---|---|---|---|---|
| 2 | 1 | Homo sapiens K562 cell line genetically modified (episome) using transient transfection | ENCBS655ORZ | ENCGM845IYM | ENCLB227ACX |
| 4 | 1 | Homo sapiens K562 cell line genetically modified (episome) using transient transfection | ENCBS366IDN | ENCGM845IYM | ENCLB930QDD |
| 1 | 1 | Homo sapiens K562 cell line genetically modified (episome) using transient transfection | ENCBS417PWP | ENCGM845IYM | ENCLB840PQJ |
| 3 | 1 | Homo sapiens K562 cell line genetically modified (episome) using transient transfection | ENCBS322MIG | ENCGM845IYM | ENCLB521MHS |