Functional Characterization Experiment summary for ENCSR639EDX

doi:10.17989/ENCSR639EDX

Summary

Status
released
Assay
Flow-FISH CRISPR screen
Biosample summary
Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for chr11:33064196-34664119
Biosample Type
cell line
Perturbation type
CRISPRi
Tiling modality
full tiling
Examined loci
CAT (0-10%)
CRISPR screen readout
HCR-FlowFISH
Replication type
isogenic
Description
CAT
Treatments
1 μg/mL doxycycline (CHEBI:50845) for 48 hours
Nucleic acid type
DNA
Controls
Elements references
Elements cloning
ENCSR321OIB

Attribution

ENCODE4 project
Lab
Pardis Sabeti, Broad
Award
UM1HG009435 (Pardis Sabeti, Broad)
Project
ENCODE
Aliases
pardis-sabeti:CAT_LS_exp
Date submitted
December 18, 2020
Date released
May 20, 2021
Functional Characterization Series
ENCSR794SPV 

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Library
21Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) treated with 1 μg/mL doxycycline for 48 hoursENCBS887HVFENCGM097HOE, ENCGM470LXQENCLB623YFP
11Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) treated with 1 μg/mL doxycycline for 48 hoursENCBS361ZLRENCGM097HOE, ENCGM470LXQENCLB605PEX