Functional Characterization Experiment summary for ENCSR820VEF
doi:10.17989/ENCSR820VEF
Summary
- Status
- released
- Assay
- perturbation followed by snATAC-seq
- Biosample summary
- Homo sapiens GM12878, 6 days post-nucleic acid delivery time genetically modified (insertion) using transduction, using CRISPRi (sgRNA)
- Biosample Type
- cell line
- Replication type
- unreplicated
- Description
- CRISPRi perturbation of GM12878s
- Nucleic acid type
- DNA
- Size range
- 100-1000
- Platform
- Illumina NextSeq 550
- Elements references
Attribution
ENCODE4 project
- Lab
- Will Greenleaf, Stanford
- Award
- UM1HG009436 (Will Greenleaf, Stanford)
- Project
- ENCODE
- External resources
- Aliases
- will-greenleaf:sp_experiment8
- Date released
- September 17, 2022
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Library |
|---|---|---|---|---|---|
| 1 | 3 | Homo sapiens GM12878 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA), 6 days post-nucleic acid delivery time | ENCBS849KTN | ENCGM795IKY, ENCGM617AEN | ENCLB699JWK |
| 1 | 4 | Homo sapiens GM12878 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA), 6 days post-nucleic acid delivery time | ENCBS849KTN | ENCGM795IKY, ENCGM617AEN | ENCLB968HYI |
| 1 | 1 | Homo sapiens GM12878 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA), 6 days post-nucleic acid delivery time | ENCBS849KTN | ENCGM795IKY, ENCGM617AEN | ENCLB308VWM |
| 1 | 2 | Homo sapiens GM12878 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA), 6 days post-nucleic acid delivery time | ENCBS849KTN | ENCGM795IKY, ENCGM617AEN | ENCLB898DJF |