Functional Characterization Experiment summary for ENCSR637ASK

doi:10.17989/ENCSR637ASK

Summary

Status
released
Assay
Flow-FISH CRISPR screen
Biosample summary
Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple loci
Biosample Type
cell line
Perturbation type
CRISPRi
Tiling modality
peak tiling
Examined loci
SEC61A1 (35-45%)
CRISPR screen readout
PrimeFlow
Replication type
isogenic
Nucleic acid type
DNA
Size range
200-210

Attribution

ENCODE4 project
Lab
Jesse Engreitz, Stanford
Award
UM1HG009436 (Will Greenleaf, Stanford)
Project
ENCODE
Aliases
jesse-engreitz:CRISPRiFlowFISH-K562-SEC61A1-binC_funccharexp
Date released
January 7, 2021
Functional Characterization Series
ENCSR760TSA 

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Library
12Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)ENCBS803RTBENCGM924EDC, ENCGM912CXWENCLB501HCS
21Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)ENCBS545VAWENCGM924EDC, ENCGM912CXWENCLB083XKS
13Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)ENCBS803RTBENCGM924EDC, ENCGM912CXWENCLB497GLG
24Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)ENCBS545VAWENCGM924EDC, ENCGM912CXWENCLB870TKJ
11Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)ENCBS803RTBENCGM924EDC, ENCGM912CXWENCLB322AQE
22Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)ENCBS545VAWENCGM924EDC, ENCGM912CXWENCLB177WBH
14Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)ENCBS803RTBENCGM924EDC, ENCGM912CXWENCLB590DWL
23Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)ENCBS545VAWENCGM924EDC, ENCGM912CXWENCLB582MUE