Functional Characterization Experiment summary for ENCSR235OSX

doi:10.17989/ENCSR235OSX

Summary

Status
released
Assay
Flow-FISH CRISPR screen
Biosample summary
Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple loci
Biosample Type
cell line
Perturbation type
CRISPRi
Tiling modality
peak tiling
Examined loci
SEC61A1 (55-65%)
CRISPR screen readout
PrimeFlow
Replication type
isogenic
Nucleic acid type
DNA
Size range
200-210

Attribution

ENCODE4 project
Lab
Jesse Engreitz, Stanford
Award
UM1HG009436 (Will Greenleaf, Stanford)
Project
ENCODE
Aliases
jesse-engreitz:CRISPRiFlowFISH-K562-SEC61A1-binD_funccharexp
Date released
January 7, 2021
Functional Characterization Series
ENCSR760TSA 

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Library
11Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)ENCBS366MQKENCGM924EDC, ENCGM912CXWENCLB115GCG
13Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)ENCBS366MQKENCGM924EDC, ENCGM912CXWENCLB219LFZ
14Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)ENCBS366MQKENCGM924EDC, ENCGM912CXWENCLB796QAM
21Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)ENCBS997VONENCGM924EDC, ENCGM912CXWENCLB787LGC
24Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)ENCBS997VONENCGM924EDC, ENCGM912CXWENCLB232IKT
12Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)ENCBS366MQKENCGM924EDC, ENCGM912CXWENCLB698KBT
22Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)ENCBS997VONENCGM924EDC, ENCGM912CXWENCLB742OXB
23Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)ENCBS997VONENCGM924EDC, ENCGM912CXWENCLB938UOK