Functional Characterization Experiment summary for ENCSR039GIG

doi:10.17989/ENCSR039GIG

Summary

Status
revoked
Assay
Flow-FISH CRISPR screen
Biosample summary
Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple loci
Biosample Type
cell line
Tiling modality
peak tiling
Examined loci
TNPO2 (80-90%)
CRISPR screen readout
PrimeFlow
Replication type
unreplicated
Nucleic acid type
DNA
Size range
200-210

Attribution

ENCODE4 project
Lab
Jesse Engreitz, Stanford
Award
UM1HG009436 (Will Greenleaf, Stanford)
Project
ENCODE
Aliases
jesse-engreitz:CRISPRiFlowFISH-K562-TNPO2-binE_funccharexp
Date released
January 7, 2021
Submitter comment
This dataset was revoked because it did not pass the lab's QC assessments.

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Library
11Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)ENCBS045NOXENCGM924EDC, ENCGM912CXWENCLB934VNK
14Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)ENCBS045NOXENCGM924EDC, ENCGM912CXWENCLB000VPQ
12Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)ENCBS045NOXENCGM924EDC, ENCGM912CXWENCLB235KGJ
13Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)ENCBS045NOXENCGM924EDC, ENCGM912CXWENCLB841FUV