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  • MPRA in WTC11
    Elements cloned into the lentiMPRA vector upstream of a minimal promoter, with barcode located in the 5' UTR of the reporter. Elements test neuronal enhancers and promoters.
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR548AQS
    released
  • MPRA in SK-N-SH
    Homo sapiens SK-N-SH, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR959NUX
    released
  • MPRA in HepG2
    Homo sapiens HepG2, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR167HAR
    released
  • MPRA in K562
    Homo sapiens K562, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR341GVP
    released
  • MPRA in HepG2
    Homo sapiens HepG2, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR694VUM
    released
  • MPRA in K562
    Homo sapiens K562, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR909JVP
    released
  • MPRA in K562
    Homo sapiens K562, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR820RPI
    released
  • MPRA in WTC11
    Elements cloned into the lentiMPRA vector upstream of a minimal promoter, with barcode located in the 5' UTR of the reporter. Elements test potential HepG2, K562, and WTC11 enhancers and promoters of all protein-coding genes.
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR336MKI
    released
  • MPRA in HepG2
    Elements cloned into the lentiMPRA vector upstream of a minimal promoter, with barcode located in the 5' UTR of the reporter. Elements test potential HepG2, K562, and WTC11 enhancers and promoters of all protein-coding genes.
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR405QCT
    released
  • MPRA in K562
    Elements cloned into the lentiMPRA vector upstream of a minimal promoter, with barcode located in the 5' UTR of the reporter. Elements test potential HepG2, K562, and WTC11 enhancers and promoters of all protein-coding genes.
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR203UFY
    released
  • MPRA in WTC11
    Elements cloned into the lentiMPRA vector upstream of a minimal promoter, with barcode located in the 5' UTR of the reporter. Elements test potential WTC11 enhancers and promoters of protein-coding genes.
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR244FWB
    released
  • MPRA in HepG2
    Elements cloned into the lentiMPRA vector upstream of a minimal promoter, with barcode located in the 5' UTR of the reporter. Elements test HepG2 enhancers and promoters of all protein-coding genes.
    Elements selection method: synthetic elements
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR632EPR
    released
  • MPRA of TERT locus in glial cell
    Elements cloned into the pGL4.11 vector upstream of the reporter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the TERT promoter.
    Loci: TERT
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR976YTH
    released
  • MPRA of TERT locus in glial cell
    Elements cloned into the pGL4.11 vector upstream of the reporter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the TERT promoter.
    Loci: TERT
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR759LCV
    released
  • MPRA of TERT locus in glial cell
    Elements cloned into the pGL4.11 vector upstream of the reporter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the TERT promoter.
    Loci: TERT
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR782GCT
    released
  • MPRA of TERT locus in HEK293T
    Elements cloned into the pGL4.11 vector upstream of the reporter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the TERT promoter.
    Loci: TERT
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR821FQH
    released
  • MPRA of SORT1 locus in HepG2
    Elements cloned into the pGL4.23 vector upstream of a minimal promoter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the SORT enhancer, using 3' to 5' direction.
    Loci: SORT1
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR281FRP
    released
  • MPRA of SORT1 locus in HepG2
    Elements cloned into the pGL4.23 vector upstream of a minimal promoter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the SORT1 enhancer.
    Loci: SORT1
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR058RIG
    released
  • MPRA of SORT1 locus in HepG2
    Elements cloned into the pGL4.23 vector upstream of a minimal promoter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the SORT1 enhancer.
    Loci: SORT1
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR259LFO
    released
  • MPRA of PKLR locus in K562
    Elements cloned into the pGL4.11 vector upstream of the reporter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the PKLR promoter.
    Loci: PKLR
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR987WTK
    released
  • MPRA of PKLR locus in K562
    Elements cloned into the pGL4.11 vector upstream of the reporter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the PKLR promoter.
    Loci: PKLR
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR845WND
    released
  • MPRA of MYC locus in HEK293T
    Elements cloned into the pGL4.23 vector upstream of a minimal promoter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the MYC enhancer around SNP rs6983267.
    Loci: MYC
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR883DOL
    released
  • MPRA of MYC locus in LNCAP
    Elements cloned into the pGL4.23 vector upstream of a minimal promoter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the MYC enhancer around SNP rs11986220.
    Loci: MYC
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR812ICI
    released
  • MPRA of MSMB locus in HEK293T
    Elements cloned into the pGL4.11 vector upstream of the reporter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the MSMB promoter.
    Loci: MSMB
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR934HHR
    released
  • MPRA of LDLR locus in HepG2
    Elements cloned into the pGL4.11 vector upstream of the reporter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the LDLR promoter.
    Loci: LDLR
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR739VGY
    released
  • MPRA of LDLR locus in HepG2
    Elements cloned into the pGL4.11 vector upstream of the reporter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the LDLR promoter.
    Loci: LDLR
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR912KDN
    released
  • MPRA of IRF6 locus in HaCaT
    Elements cloned into the pGL4.23 vector upstream of a minimal promoter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the IRF6 enhancer.
    Loci: IRF6
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR270PHO
    released
  • MPRA of IRF4 locus in SK-MEL-28
    Elements cloned into the pGL4.23 vector upstream of a minimal promoter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the IRF4 enhancer.
    Loci: IRF4
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR006GAG
    released
  • MPRA of HNF4A locus in HEK293T
    Elements cloned into the pGL4.11 vector upstream of the reporter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the HNF4A promoter.
    Loci: HNF4A
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR701WDZ
    released
  • MPRA of HBG1 locus in HEL
    Elements cloned into the pGL4.11 vector upstream of the reporter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the HBG1 promoter.
    Loci: HBG1
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR686LKF
    released
  • MPRA of HBB locus in HEL
    Elements cloned into the pGL4.11 vector upstream of the reporter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the HBB promoter.
    Loci: HBB
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR200LXA
    released
  • MPRA of GP1BB locus in HEL
    Elements cloned into the pGL4.11 vector upstream of the reporter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the GP1BB promoter.
    Loci: GP1BB
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR436DRI
    released
  • MPRA of FOXE1 locus in HeLa
    Elements cloned into the pGL4.11 vector upstream of the reporter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the FOXE1 promoter.
    Loci: FOXE1
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR373WOB
    released
  • MPRA of F9 locus in HepG2
    Elements cloned into the pGL4.11 vector upstream of the reporter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the F9 promoter.
    Loci: F9
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR352YKN
    released
  • MPRA of BCL11A locus in HEL
    Elements cloned into the pGL4.23 vector upstream of a minimal promoter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the BCL11A enhancer.
    Loci: BCL11A
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR330ZFH
    released
  • MPRA in K562
    Homo sapiens K562, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR971PLA
    released
  • MPRA in A549
    Homo sapiens A549, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR888DPV
    released
  • MPRA in SK-N-SH
    Homo sapiens SK-N-SH, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR856SQG
    released
  • MPRA in GM12878
    Homo sapiens GM12878, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR587IBO
    released
  • MPRA in K562
    Homo sapiens K562, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR274WZF
    released
  • MPRA in HepG2
    Homo sapiens HepG2, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR811QES
    released
  • MPRA of multiple loci in K562
    Homo sapiens K562, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection for multiple loci
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR363XER
    released
  • MPRA of multiple loci in K562
    Homo sapiens K562, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection for multiple loci
    Loci: GATA1, MYC
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR917SFD
    released
  • MPRA in HCT116
    Homo sapiens HCT116, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR873QHK
    released
  • MPRA in HepG2
    Homo sapiens HepG2, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR833BYO
    released
  • MPRA in SK-N-SH
    Homo sapiens SK-N-SH, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR579QGV
    released
  • MPRA in HCT116
    Homo sapiens HCT116, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR443ZPY
    released
  • MPRA in HepG2
    Homo sapiens HepG2, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR554UKK
    released
  • MPRA in SK-N-SH
    Homo sapiens SK-N-SH, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR386XIB
    released
  • MPRA in SK-N-SH
    Homo sapiens SK-N-SH, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: DNase hypersensitive sites, histone modifications, synthetic elements
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR087VPA
    released
  • MPRA in HepG2
    Homo sapiens HepG2, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: DNase hypersensitive sites, histone modifications, synthetic elements
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR463DWN
    released
  • MPRA in HepG2
    Homo sapiens HepG2, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: DNase hypersensitive sites, histone modifications, synthetic elements
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR447RLV
    released
  • MPRA in K562
    Homo sapiens K562, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: DNase hypersensitive sites, histone modifications, synthetic elements
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR326HQU
    released
  • MPRA in A549
    Homo sapiens A549, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR793OLW
    released
  • MPRA in A549
    Homo sapiens A549, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR213UGS
    released
  • MPRA in A549
    Homo sapiens A549, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR645XWQ
    released
  • MPRA in A549
    Homo sapiens A549, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR653QXW
    released
  • MPRA in A549
    Homo sapiens A549, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR273YGD
    released
  • MPRA in A549
    Homo sapiens A549, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR523VYM
    released
  • MPRA in A549
    Homo sapiens A549, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR729IRS
    released
  • MPRA in SK-N-SH
    Homo sapiens SK-N-SH genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR181PJG
    released
  • MPRA in mammary epithelial cell
    Homo sapiens mammary epithelial cell female genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR616NNF
    released
  • MPRA in HepG2
    Homo sapiens HepG2 genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR885ULM
    released
  • MPRA in K562
    Homo sapiens K562 genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR147BIK
    released
  • MPRA in GM12878
    Homo sapiens GM12878 genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR812PWW
    released
  • MPRA in HEK293
    Homo sapiens HEK293 genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR781PSG
    released
  • MPRA in HEK293
    Homo sapiens HEK293 genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR481QRH
    released
  • MPRA in HepG2
    Elements cloned into the lentiMPRA vector upstream of a minimal promoter, with barcode located in the 5' UTR of the reporter. Elements test HepG2 enhancers and promoters of all protein-coding genes.
    Elements selection method: DNase hypersensitive sites
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR022GQD
    released
  • MPRA in K562
    Elements cloned into the lentiMPRA vector upstream of a minimal promoter, with barcode located in the 5' UTR of the reporter. Elements test K562 enhancers and promoters of all protein-coding genes.
    Elements selection method: DNase hypersensitive sites
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR382BVV
    released
  • MPRA in HepG2
    Elements cloned into the pGL4 vector upstream of a minimal promoter. Test of a mix of short, medium, and long elements in parallel.
    Elements selection method: DNase hypersensitive sites
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR215YXA
    released
  • MPRA in HepG2
    Elements cloned into the pGL4 vector upstream of a minimal promoter. Test of the same set of elements in both the forward and reverse orientations in parallel.
    Elements selection method: DNase hypersensitive sites
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR881ERG
    released
  • MPRA in HepG2
    Elements and barcodes cloned into the 3' UTR of a reporter in a lentiviral vector, using a mutant integrase to prevent genomic integration. One of nine methods testing element activity in parallel.
    Elements selection method: DNase hypersensitive sites
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR255GVC
    released
  • MPRA in HepG2
    Elements and barcodes cloned into the 3' UTR of a reporter in a lentiviral vector, using a wild type integrase to allow genomic integration. One of nine methods testing element activity in parallel.
    Elements selection method: DNase hypersensitive sites
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR069RCF
    released
  • MPRA in HepG2
    Elements cloned upstream of the reporter's minimal promoter, with barcode located in the 3' UTR of a reporter in a lentiviral vector, using a mutant integrase to prevent genomic integration. One of nine methods testing element activity in parallel.
    Elements selection method: DNase hypersensitive sites
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR202CHZ
    released
  • MPRA in HepG2
    Elements cloned upstream of the reporter's minimal promoter, with barcode located in the 3' UTR of a reporter in a lentiviral vector, using a wild type integrase to allow genomic integration. One of nine methods testing element activity in parallel.
    Elements selection method: DNase hypersensitive sites
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR478ESZ
    released
  • MPRA in HepG2
    Elements cloned upstream of the reporter's minimal promoter, with barcode located in the 5' UTR of a reporter in a lentiviral vector, using a mutant integrase to prevent genomic integration. One of nine methods testing element activity in parallel.
    Elements selection method: DNase hypersensitive sites
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR080JVM
    released
  • MPRA in HepG2
    Elements cloned upstream of the reporter's minimal promoter, with barcode located in the 5' UTR of a reporter in a lentiviral vector, using a wild type integrase to allow genomic integration. One of nine methods testing element activity in parallel.
    Elements selection method: DNase hypersensitive sites
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR839LDC
    released
  • MPRA in HepG2
    Elements cloned into the ORI (STARR-seq lacking a minimal promoter) vector, with both elements and barcodes cloned into the 3' UTR. Tested in the same batch as ORI_b2, using primers around the full element and barcode to circumvent the possible detection of artifacts emerging from transcription initiation internal to the upstream element.
    Elements selection method: DNase hypersensitive sites
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR208DGH
    released
  • MPRA in HepG2
    Elements cloned into the ORI (STARR-seq lacking a minimal promoter) vector, with both elements and barcodes cloned into the 3' UTR. Tested in an independent, second batch as ORI, and serves as an internal control to ORI_full.
    Elements selection method: DNase hypersensitive sites
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR787MOJ
    released
  • MPRA in HepG2
    Elements cloned into the ORI (STARR-seq lacking a minimal promoter) vector, with both elements and barcodes cloned into the 3' UTR. One of nine methods testing element activity in parallel.
    Elements selection method: DNase hypersensitive sites
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR760GMX
    released
  • MPRA in HepG2
    Elements cloned into the HSS (STARR-seq) vector, with both elements and barcodes cloned into the 3' UTR. Tested in the same batch as HSS_b2, using primers around the full element and barcode to circumvent the possible detection of artifacts emerging from transcription initiation internal to the upstream element.
    Elements selection method: DNase hypersensitive sites
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR002UCW
    released
  • MPRA in HepG2
    Elements cloned into the HSS (STARR-seq) vector, with both elements and barcodes cloned into the 3' UTR. Tested in an independent, second batch as HSS, and serves as an internal control to HSS_full.
    Elements selection method: DNase hypersensitive sites
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR049RIU
    released
  • MPRA in HepG2
    Elements cloned into the HSS (STARR-seq) vector, with both elements and barcodes cloned into the 3' UTR. One of nine methods testing element activity in parallel.
    Elements selection method: DNase hypersensitive sites
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR661ZUO
    released
  • MPRA in HepG2
    Elements cloned into the pGL4 vector upstream of a minimal promoter. One of nine methods testing element activity in parallel.
    Elements selection method: DNase hypersensitive sites
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR509EUX
    released
  • MPRA in HepG2
    Homo sapiens HepG2, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR843APF
    released
  • MPRA in SK-N-SH
    Homo sapiens SK-N-SH, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR562GGR
    released
  • MPRA in GM12878
    Homo sapiens GM12878, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR560QIE
    released
  • MPRA in K562
    Homo sapiens K562, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR003TJR
    released
  • MPRA in HepG2
    Homo sapiens HepG2, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR712VZT
    released
  • MPRA in SK-N-SH
    Homo sapiens SK-N-SH, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR574GPT
    released
  • MPRA in GM12878
    Homo sapiens GM12878, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR918IAV
    released
  • MPRA in K562
    Homo sapiens K562, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR135MRI
    released
  • MPRA in HepG2
    Homo sapiens HepG2, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR222QJT
    released
  • MPRA in SK-N-SH
    Homo sapiens SK-N-SH, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR505LQA
    released
  • MPRA in GM12878
    Homo sapiens GM12878, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR410EJE
    released
  • MPRA in K562
    Homo sapiens K562, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR753ZRI
    released
  • MPRA in HepG2
    Homo sapiens HepG2, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR045VPN
    released
  • MPRA in SK-N-SH
    Homo sapiens SK-N-SH, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR563TTU
    released
  • MPRA in GM12878
    Homo sapiens GM12878, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR248ZDI
    released
  • MPRA in K562
    Homo sapiens K562, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR997GVD
    released
  • MPRA in HepG2
    Homo sapiens HepG2, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR736XUK
    released
  • MPRA in SK-N-SH
    Homo sapiens SK-N-SH, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR742AAP
    released
  • MPRA in GM12878
    Homo sapiens GM12878, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR015VGW
    released
  • MPRA in K562
    Homo sapiens K562, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR697PNZ
    released
  • MPRA in HepG2
    Homo sapiens HepG2, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR979TSK
    released
  • MPRA in SK-N-SH
    Homo sapiens SK-N-SH, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR833GXJ
    released
  • MPRA in GM12878
    Homo sapiens GM12878, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR368PIO
    released
  • MPRA in K562
    Homo sapiens K562, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR653LWA
    released
  • MPRA in HepG2
    Homo sapiens HepG2, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR847SNQ
    released
  • MPRA in SK-N-SH
    Homo sapiens SK-N-SH, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR623DJZ
    released
  • MPRA in GM12878
    Homo sapiens GM12878, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR645CIP
    released
  • MPRA in K562
    Homo sapiens K562, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR857JFG
    released
  • MPRA in HepG2
    Homo sapiens HepG2, 48 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR354FXV
    released
  • MPRA in SK-N-SH
    Homo sapiens SK-N-SH, 48 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR541FWB
    released
  • MPRA in Jurkat
    Homo sapiens Jurkat, 48 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR247RPW
    released
  • MPRA in K562
    Homo sapiens K562, 48 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR971BEX
    released
  • MPRA of multiple loci in K562
    Homo sapiens K562, 48 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection for multiple loci
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR394HXI
    released
  • MPRA in K562
    Elements cloned into the lentiMPRA vector upstream of a minimal promoter, with barcode located in the 5' UTR of the reporter. Elements test K562/Hepg2 enhancers as a pilot library to a larger-scale experiment.
    Elements selection method: DNase hypersensitive sites
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR460LZI
    released
  • MPRA in HepG2
    Elements cloned into the lentiMPRA vector upstream of a minimal promoter, with barcode located in the 5' UTR of the reporter. Elements test K562/Hepg2 enhancers as a pilot library to a larger-scale experiment.
    Elements selection method: DNase hypersensitive sites
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR463IRX
    released