Functional Characterization Experiment summary for ENCSR436DRI

doi:10.17989/ENCSR436DRI

Summary

Status
released
Assay
MPRA
Biosample summary
Homo sapiens HEL genetically modified (insertion) using transient transfection for GP1BB locus
Biosample Type
cell line
Replication type
isogenic
Description
Elements cloned into the pGL4.11 vector upstream of the reporter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the GP1BB promoter.
Nucleic acid type
RNA
Size range
10-20
Fragmentation methods
chemical (Illumina TruSeq)
Strand specificity
unstranded
Controls
Elements references
Elements mappings

Attribution

ENCODE4 project
Lab
Nadav Ahituv, UCSF
Award
UM1HG009408 (Jay Shendure, UW)
Project
ENCODE
References
Aliases
nadav-ahituv:GP1BB-mpra-satMut-RNA
Date released
October 11, 2022

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Library
11Homo sapiens HEL cell line genetically modified (insertion) using transient transfectionENCBS342AAXENCGM955MLHENCLB381WTY
21Homo sapiens HEL cell line genetically modified (insertion) using transient transfectionENCBS933KQUENCGM955MLHENCLB415QQF
31Homo sapiens HEL cell line genetically modified (insertion) using transient transfectionENCBS862KAMENCGM955MLHENCLB411HDS