Functional Characterization Experiment summary for ENCSR080JVM

doi:10.17989/ENCSR080JVM

Summary

Status
released
Assay
MPRA
Biosample summary
Homo sapiens HepG2 genetically modified using transduction
Biosample Type
cell line
Replication type
isogenic
Description
Elements cloned upstream of the reporter's minimal promoter, with barcode located in the 5' UTR of a reporter in a lentiviral vector, using a mutant integrase to prevent genomic integration. One of nine methods testing element activity in parallel.
Nucleic acid type
RNA
Size range
10-20
Fragmentation methods
chemical (Illumina TruSeq)
Controls
Elements references
Elements mapping
ENCSR638VYO

Attribution

ENCODE4 project
Lab
Nadav Ahituv, UCSF
Award
UM1HG009408 (Jay Shendure, UW)
Project
ENCODE
Aliases
nadav-ahituv:55_MT-mpra-RNA
Date submitted
December 2, 2020
Date released
February 19, 2021

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Library
11HepG2 cell line genetically modified (insertion) using transductionENCBS196LXNENCGM565EAWENCLB048AJG
21HepG2 cell line genetically modified (insertion) using transductionENCBS441GNQENCGM565EAWENCLB591QXR
31HepG2 cell line genetically modified (insertion) using transductionENCBS980SUOENCGM565EAWENCLB535UGZ