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  • STARR-seq in K562
    Homo sapiens K562 genetically modified (episome) using transient transfection
    Lab: Tim Reddy, Duke
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR926NDZ
    released
  • STARR-seq in glutamatergic neuron
    Homo sapiens glutamatergic neuron, 7 days post differentiation genetically modified (episome) using transient transfection, (insertion) using TALEN inserting M. musculus Neurog2
    Lab: Kevin White, UChicago
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR258QGF
    released
  • STARR-seq in K562
    Homo sapiens K562 genetically modified (episome) using transient transfection
    Elements selection method: accessible genome regions
    Lab: Tim Reddy, Duke
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR312UQM
    released
  • STARR-seq in glutamatergic neuron
    Homo sapiens glutamatergic neuron, 14 days post differentiation genetically modified (episome) using transient transfection, (insertion) using TALEN inserting M. musculus Neurog2 originated from WTC11
    Lab: Kevin White, UChicago
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR433JKU
    released
  • STARR-seq in WTC11
    Homo sapiens WTC11 genetically modified (episome) using transient transfection, (insertion) using TALEN inserting M. musculus Neurog2
    Lab: Kevin White, UChicago
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR749AQU
    released
  • STARR-seq in pancreas organoid
    Homo sapiens organoid with pancreatic ductal adenocarcinoma; pancreas genetically modified (episome) using transient transfection
    Elements selection method: accessible genome regions, histone modifications
    Lab: Kevin White, UChicago
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR230PPM
    released
  • STARR-seq in pancreas organoid
    Homo sapiens organoid with pancreatic ductal adenocarcinoma; pancreas genetically modified (episome) using transient transfection
    Elements selection method: accessible genome regions, histone modifications, DNase hypersensitive sites
    Lab: Kevin White, UChicago
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR948LAJ
    released
  • STARR-seq in pancreas organoid
    Homo sapiens organoid with pancreatic ductal adenocarcinoma; pancreas genetically modified (episome) using transient transfection
    Elements selection method: accessible genome regions, histone modifications
    Lab: Kevin White, UChicago
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR001HGB
    released
  • STARR-seq in pancreas organoid
    Homo sapiens organoid with pancreatic ductal adenocarcinoma; pancreas genetically modified (episome) using transient transfection
    Elements selection method: accessible genome regions, histone modifications, DNase hypersensitive sites
    Lab: Kevin White, UChicago
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR874TTC
    released
  • STARR-seq in A549
    Homo sapiens A549 genetically modified (episome) using transient transfection treated with 1 μM ZK216348 (agonist) for 4 hours
    Lab: Tim Reddy, Duke
    Project: ENCODE
    Treatment: 1 μM ZK216348 for 4 hours
    Functional Characterization Experiment
    ENCSR802ODH
    released
  • STARR-seq in A549
    Homo sapiens A549 genetically modified (episome) using transient transfection treated with 1 μM RU486 (antagonist) for 4 hours
    Lab: Tim Reddy, Duke
    Project: ENCODE
    Treatment: 1 μM RU486 for 4 hours
    Functional Characterization Experiment
    ENCSR319VAS
    released
  • STARR-seq in A549
    Homo sapiens A549 genetically modified (episome) using transient transfection treated with 1 μM Mapracorat (agonist) for 4 hours
    Lab: Tim Reddy, Duke
    Project: ENCODE
    Treatment: 1 μM Mapracorat for 4 hours
    Functional Characterization Experiment
    ENCSR687CTB
    released
  • STARR-seq in A549
    Homo sapiens A549 genetically modified (episome) using transient transfection treated with 1 μM Hydrocortisone (agonist) for 4 hours
    Lab: Tim Reddy, Duke
    Project: ENCODE
    Treatment: 1 μM Hydrocortisone for 4 hours
    Functional Characterization Experiment
    ENCSR261RMM
    released
  • STARR-seq in A549
    Homo sapiens A549 genetically modified (episome) using transient transfection treated with 1 μM GW870086 (agonist) for 4 hours
    Lab: Tim Reddy, Duke
    Project: ENCODE
    Treatment: 1 μM GW870086 for 4 hours
    Functional Characterization Experiment
    ENCSR534WIF
    released
  • STARR-seq in A549
    Homo sapiens A549 genetically modified (episome) using transient transfection
    Lab: Tim Reddy, Duke
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR005XEA
    released
  • STARR-seq in A549
    Homo sapiens A549 genetically modified (episome) using transient transfection treated with 1 μM dexamethasone (agonist) for 4 hours
    Lab: Tim Reddy, Duke
    Project: ENCODE
    Treatment: 1 μM dexamethasone (CHEBI:41879) for 4 hours
    Functional Characterization Experiment
    ENCSR459NUS
    released
  • STARR-seq in A549
    Homo sapiens A549 genetically modified (episome) using transient transfection treated with 1 μM CpdA (antagonist) for 4 hours
    Lab: Tim Reddy, Duke
    Project: ENCODE
    Treatment: 1 μM CpdA for 4 hours
    Functional Characterization Experiment
    ENCSR176UAM
    released
  • STARR-seq in A549
    Homo sapiens A549 genetically modified (episome) using transient transfection treated with 1 μM CORT108297 (antagonist) for 4 hours
    Lab: Tim Reddy, Duke
    Project: ENCODE
    Treatment: 1 μM CORT108297 for 4 hours
    Functional Characterization Experiment
    ENCSR543JLA
    released
  • STARR-seq in A549
    Homo sapiens A549 genetically modified (episome) using transient transfection treated with 1 μM AZD9567 (agonist) for 4 hours
    Lab: Tim Reddy, Duke
    Project: ENCODE
    Treatment: 1 μM AZD9567 for 4 hours
    Functional Characterization Experiment
    ENCSR262PQN
    released
  • STARR-seq in A549
    Homo sapiens A549 genetically modified (episome) using transient transfection treated with 1 μM AZD2906 (agonist) for 4 hours
    Lab: Tim Reddy, Duke
    Project: ENCODE
    Treatment: 1 μM AZD2906 for 4 hours
    Functional Characterization Experiment
    ENCSR282GET
    released
  • STARR-seq in K562
    Homo sapiens K562 genetically modified (episome) using transient transfection
    Lab: Tim Reddy, Duke
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR661FOW
    released
  • STARR-seq in K562
    Single human gDNA fragments and concatenated pairs of such fragments were tested for their enhancer activity with eSTARR-seq. The RNAs derived from the transfected plasmids were sequenced and reported here.
    Elements selection method: transcription start sites
    Lab: Haiyuan Yu, Cornell
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR585AGE
    released
  • STARR-seq in K562
    Human gDNA fragments were selected based on DHS data, GRO-cap data, and/or histone marks in K562 cells and tested for their enhancer activity with eSTARR-seq. The RNAs derived from the transfected plasmids were sequenced and reported here.
    Elements selection method: DNase hypersensitive sites, transcription start sites, chromatin states
    Lab: Haiyuan Yu, Cornell
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR729EGU
    released
  • STARR-seq in K562
    Human gDNA fragments were selected based on DHS data, GRO-cap data, and/or histone marks in K562 cells and tested for their enhancer activity with eSTARR-seq. The RNAs derived from the transfected plasmids were sequenced and reported here.
    Elements selection method: DNase hypersensitive sites, transcription start sites, chromatin states
    Lab: Haiyuan Yu, Cornell
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR514FNW
    released
  • STARR-seq in A549
    Homo sapiens A549 genetically modified (episome) using transient transfection treated with 100 nM dexamethasone (agonist) for 12 hours
    Lab: Tim Reddy, Duke
    Project: GGR
    Treatment: 100 nM dexamethasone (CHEBI:41879) for 12 hours
    Functional Characterization Experiment
    ENCSR220FPS
    released