Functional Characterization Experiment summary for ENCSR319VAS
doi:10.17989/ENCSR319VAS
Summary
- Status
- released
- Assay
- STARR-seq
- Biosample summary
- Homo sapiens A549 genetically modified (episome) using transient transfection treated with 1 μM RU486 (antagonist) for 4 hours
- Biosample Type
- cell line
- Replication type
- isogenic
- Treatments
- 1 μM RU486 for 4 hours
- Nucleic acid type
- RNA
- Library starting quantity
- 75µg
- Size range
- 900-1000
- Extraction method
- Qiagen RNA extraction
- Strand specificity
- Strand-specific (reverse)
- Platform
- Illumina NovaSeq 6000
- Controls
Attribution
ENCODE4 project
- Lab
- Tim Reddy, Duke
- Award
- UM1HG009428 (Tim Reddy, Duke)
- Project
- ENCODE
- Aliases
- tim-reddy:A549-wg-starrseq-RU486
- Date submitted
- June 11, 2021
- Date released
- June 17, 2021
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Library |
|---|---|---|---|---|---|
| 1 | 4 | Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM RU486 (antagonist) for 4 hours | ENCBS028BAJ | ENCGM016JFT | ENCLB285RAE |
| 3 | 1 | Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM RU486 (antagonist) for 4 hours | ENCBS556ENL | ENCGM016JFT | ENCLB619EZN |
| 2 | 4 | Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM RU486 (antagonist) for 4 hours | ENCBS223VDH | ENCGM016JFT | ENCLB078BIP |
| 3 | 3 | Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM RU486 (antagonist) for 4 hours | ENCBS556ENL | ENCGM016JFT | ENCLB766HAW |
| 1 | 1 | Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM RU486 (antagonist) for 4 hours | ENCBS028BAJ | ENCGM016JFT | ENCLB600GZM |
| 4 | 4 | Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM RU486 (antagonist) for 4 hours | ENCBS983INB | ENCGM016JFT | ENCLB832ZNV |
| 3 | 2 | Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM RU486 (antagonist) for 4 hours | ENCBS556ENL | ENCGM016JFT | ENCLB493IJU |
| 1 | 2 | Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM RU486 (antagonist) for 4 hours | ENCBS028BAJ | ENCGM016JFT | ENCLB794NWE |
| 1 | 3 | Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM RU486 (antagonist) for 4 hours | ENCBS028BAJ | ENCGM016JFT | ENCLB559RUA |
| 2 | 1 | Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM RU486 (antagonist) for 4 hours | ENCBS223VDH | ENCGM016JFT | ENCLB118YOB |
| 4 | 3 | Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM RU486 (antagonist) for 4 hours | ENCBS983INB | ENCGM016JFT | ENCLB730RKA |
| 2 | 3 | Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM RU486 (antagonist) for 4 hours | ENCBS223VDH | ENCGM016JFT | ENCLB610CQJ |
| 3 | 4 | Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM RU486 (antagonist) for 4 hours | ENCBS556ENL | ENCGM016JFT | ENCLB649UIN |
| 4 | 2 | Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM RU486 (antagonist) for 4 hours | ENCBS983INB | ENCGM016JFT | ENCLB256NNX |
| 2 | 2 | Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM RU486 (antagonist) for 4 hours | ENCBS223VDH | ENCGM016JFT | ENCLB095ECF |
| 4 | 1 | Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM RU486 (antagonist) for 4 hours | ENCBS983INB | ENCGM016JFT | ENCLB147XFK |