Functional Characterization Experiment summary for ENCSR802ODH

doi:10.17989/ENCSR802ODH

Summary

Status
released
Assay
STARR-seq
Biosample summary
Homo sapiens A549 genetically modified (episome) using transient transfection treated with 1 μM ZK216348 (agonist) for 4 hours
Biosample Type
cell line
Replication type
isogenic
Treatments
1 μM ZK216348 for 4 hours
Nucleic acid type
RNA
Library starting quantity
75µg
Size range
900-1000
Extraction method
Qiagen RNA extraction
Strand specificity
Strand-specific (reverse)
Controls

Attribution

ENCODE4 project
Lab
Tim Reddy, Duke
Award
UM1HG009428 (Tim Reddy, Duke)
Project
ENCODE
Aliases
tim-reddy:A549-wg-starrseq-ZK216348
Date submitted
June 11, 2021
Date released
June 17, 2021

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Library
14Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM ZK216348 (agonist) for 4 hoursENCBS483RTQENCGM016JFTENCLB845SCZ
22Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM ZK216348 (agonist) for 4 hoursENCBS452ONWENCGM016JFTENCLB295CFY
32Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM ZK216348 (agonist) for 4 hoursENCBS544WKCENCGM016JFTENCLB894JGS
41Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM ZK216348 (agonist) for 4 hoursENCBS606XIBENCGM016JFTENCLB221VDG
23Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM ZK216348 (agonist) for 4 hoursENCBS452ONWENCGM016JFTENCLB757CTK
44Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM ZK216348 (agonist) for 4 hoursENCBS606XIBENCGM016JFTENCLB455OWV
11Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM ZK216348 (agonist) for 4 hoursENCBS483RTQENCGM016JFTENCLB692IQT
42Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM ZK216348 (agonist) for 4 hoursENCBS606XIBENCGM016JFTENCLB663XAM
12Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM ZK216348 (agonist) for 4 hoursENCBS483RTQENCGM016JFTENCLB624EJP
34Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM ZK216348 (agonist) for 4 hoursENCBS544WKCENCGM016JFTENCLB982ZFZ
13Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM ZK216348 (agonist) for 4 hoursENCBS483RTQENCGM016JFTENCLB861LSD
21Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM ZK216348 (agonist) for 4 hoursENCBS452ONWENCGM016JFTENCLB160AGL
31Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM ZK216348 (agonist) for 4 hoursENCBS544WKCENCGM016JFTENCLB076VEY
43Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM ZK216348 (agonist) for 4 hoursENCBS606XIBENCGM016JFTENCLB774PNP
24Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM ZK216348 (agonist) for 4 hoursENCBS452ONWENCGM016JFTENCLB662ATS
33Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM ZK216348 (agonist) for 4 hoursENCBS544WKCENCGM016JFTENCLB964XCJ