Functional Characterization Experiment summary for ENCSR433JKU
doi:10.17989/ENCSR433JKU
Summary
- Status
- released
- Assay
- STARR-seq
- Biosample summary
- Homo sapiens glutamatergic neuron, 14 days post differentiation genetically modified (episome) using transient transfection, (insertion) using TALEN inserting M. musculus Neurog2 originated from WTC11
- Biosample Type
- in vitro differentiated cells
- Replication type
- isogenic
- Nucleic acid type
- RNA
- Size range
- 200-600
- Fragmentation methods
- shearing (generic)
- Strand specificity
- unstranded
- Platform
- Illumina MiSeq
- Controls
Attribution
ENCODE4 project
- Lab
- Kevin White, UChicago
- Award
- UM1HG009426 (Kevin White, UChicago)
- Project
- ENCODE
- Aliases
- kevin-white:ORI-CAP-STARRseq-WTC-11-Ngn2-diff
- Date released
- March 9, 2023
- Differentiation Series
- ENCSR320WZR
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Library |
|---|---|---|---|---|---|
| 1 | 1 | Homo sapiens male adult (30 years) glutamatergic neuron in vitro differentiated cells genetically modified (episome) using transient transfection, genetically modified (insertion) using TALEN inserting M. musculus Neurog2 originated from WTC11, 14 days post differentiation | ENCBS654HPO | ENCGM693VPN, ENCGM156EZW | ENCLB016HLJ |
| 2 | 1 | Homo sapiens male adult (30 years) glutamatergic neuron in vitro differentiated cells genetically modified (episome) using transient transfection, genetically modified (insertion) using TALEN inserting M. musculus Neurog2 originated from WTC11, 14 days post differentiation | ENCBS229NUR | ENCGM693VPN, ENCGM156EZW | ENCLB336PGE |