Functional Characterization Experiment summary for ENCSR534WIF
doi:10.17989/ENCSR534WIF
Summary
- Status
- released
- Assay
- STARR-seq
- Biosample summary
- Homo sapiens A549 genetically modified (episome) using transient transfection treated with 1 μM GW870086 (agonist) for 4 hours
- Biosample Type
- cell line
- Replication type
- isogenic
- Treatments
- 1 μM GW870086 for 4 hours
- Nucleic acid type
- RNA
- Library starting quantity
- 75µg
- Size range
- 900-1000
- Extraction method
- Qiagen RNA extraction
- Strand specificity
- Strand-specific (reverse)
- Platform
- Illumina NovaSeq 6000
- Controls
Attribution
ENCODE4 project
- Lab
- Tim Reddy, Duke
- Award
- UM1HG009428 (Tim Reddy, Duke)
- Project
- ENCODE
- Aliases
- tim-reddy:A549-wg-starrseq-GW870086
- Date submitted
- June 11, 2021
- Date released
- June 17, 2021
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Library |
|---|---|---|---|---|---|
| 2 | 3 | Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM GW870086 (agonist) for 4 hours | ENCBS041XXB | ENCGM016JFT | ENCLB173TCQ |
| 1 | 3 | Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM GW870086 (agonist) for 4 hours | ENCBS450UPV | ENCGM016JFT | ENCLB979HJU |
| 1 | 4 | Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM GW870086 (agonist) for 4 hours | ENCBS450UPV | ENCGM016JFT | ENCLB492BUJ |
| 2 | 1 | Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM GW870086 (agonist) for 4 hours | ENCBS041XXB | ENCGM016JFT | ENCLB192UCL |
| 4 | 2 | Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM GW870086 (agonist) for 4 hours | ENCBS373YYI | ENCGM016JFT | ENCLB129JAF |
| 1 | 2 | Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM GW870086 (agonist) for 4 hours | ENCBS450UPV | ENCGM016JFT | ENCLB080JZI |
| 3 | 2 | Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM GW870086 (agonist) for 4 hours | ENCBS219UZO | ENCGM016JFT | ENCLB703ZSM |
| 4 | 3 | Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM GW870086 (agonist) for 4 hours | ENCBS373YYI | ENCGM016JFT | ENCLB066ASV |
| 1 | 1 | Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM GW870086 (agonist) for 4 hours | ENCBS450UPV | ENCGM016JFT | ENCLB328NGZ |
| 2 | 4 | Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM GW870086 (agonist) for 4 hours | ENCBS041XXB | ENCGM016JFT | ENCLB084PXL |
| 3 | 1 | Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM GW870086 (agonist) for 4 hours | ENCBS219UZO | ENCGM016JFT | ENCLB430PWN |
| 2 | 2 | Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM GW870086 (agonist) for 4 hours | ENCBS041XXB | ENCGM016JFT | ENCLB979IKZ |
| 3 | 3 | Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM GW870086 (agonist) for 4 hours | ENCBS219UZO | ENCGM016JFT | ENCLB068ZNI |
| 4 | 1 | Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM GW870086 (agonist) for 4 hours | ENCBS373YYI | ENCGM016JFT | ENCLB881PQC |
| 4 | 4 | Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM GW870086 (agonist) for 4 hours | ENCBS373YYI | ENCGM016JFT | ENCLB304OQN |
| 3 | 4 | Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM GW870086 (agonist) for 4 hours | ENCBS219UZO | ENCGM016JFT | ENCLB677FZJ |