1. Functional Characterization Experiments
  2. STARR-seq
  3. Homo sapiens
  4. A549

Functional Characterization Experiment summary for ENCSR459NUS

doi:10.17989/ENCSR459NUS

Summary

Status
released
Assay
STARR-seq
Biosample summary
Homo sapiens A549 genetically modified (episome) using transient transfection treated with 1 μM dexamethasone (agonist) for 4 hours
Biosample Type
cell line
Replication type
isogenic
Treatments
1 μM dexamethasone (CHEBI:41879) for 4 hours
Nucleic acid type
RNA
Library starting quantity
75µg
Size range
900-1000
Extraction method
Qiagen RNA extraction
Strand specificity
Strand-specific (reverse)
Controls

Attribution

ENCODE4 project
Lab
Tim Reddy, Duke
Award
UM1HG009428 (Tim Reddy, Duke)
Project
ENCODE
Aliases
tim-reddy:A549-wg-starrseq-Dex
Date submitted
June 11, 2021
Date released
June 17, 2021

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Library
12Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM dexamethasone (agonist) for 4 hoursENCBS862FFOENCGM016JFTENCLB223WWC
32Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM dexamethasone (agonist) for 4 hoursENCBS483MQTENCGM016JFTENCLB538NRR
23Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM dexamethasone (agonist) for 4 hoursENCBS906DTKENCGM016JFTENCLB215IMR
22Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM dexamethasone (agonist) for 4 hoursENCBS906DTKENCGM016JFTENCLB926FIK
13Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM dexamethasone (agonist) for 4 hoursENCBS862FFOENCGM016JFTENCLB616RHB
21Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM dexamethasone (agonist) for 4 hoursENCBS906DTKENCGM016JFTENCLB175GZW
31Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM dexamethasone (agonist) for 4 hoursENCBS483MQTENCGM016JFTENCLB795XFM
14Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM dexamethasone (agonist) for 4 hoursENCBS862FFOENCGM016JFTENCLB034UKB
42Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM dexamethasone (agonist) for 4 hoursENCBS781ZYPENCGM016JFTENCLB294SGK
24Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM dexamethasone (agonist) for 4 hoursENCBS906DTKENCGM016JFTENCLB220MOU
34Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM dexamethasone (agonist) for 4 hoursENCBS483MQTENCGM016JFTENCLB133HJV
43Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM dexamethasone (agonist) for 4 hoursENCBS781ZYPENCGM016JFTENCLB598VZD
11Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM dexamethasone (agonist) for 4 hoursENCBS862FFOENCGM016JFTENCLB939GTN
44Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM dexamethasone (agonist) for 4 hoursENCBS781ZYPENCGM016JFTENCLB874BHJ
33Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM dexamethasone (agonist) for 4 hoursENCBS483MQTENCGM016JFTENCLB699VPG
41Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 μM dexamethasone (agonist) for 4 hoursENCBS781ZYPENCGM016JFTENCLB721XHD

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