Clear all selections

Showing 25 of 41 results

Report
Number of displayed results:
2550100200
  • MPRA in HepG2
    Homo sapiens HepG2, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR167HAR
    released
  • MPRA in HepG2
    Homo sapiens HepG2, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR694VUM
    released
  • MPRA in HepG2
    Elements cloned into the lentiMPRA vector upstream of a minimal promoter, with barcode located in the 5' UTR of the reporter. Elements test potential HepG2, K562, and WTC11 enhancers and promoters of all protein-coding genes.
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR405QCT
    released
  • MPRA in HepG2
    Elements cloned into the lentiMPRA vector upstream of a minimal promoter, with barcode located in the 5' UTR of the reporter. Elements test HepG2 enhancers and promoters of all protein-coding genes.
    Elements selection method: synthetic elements
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR632EPR
    released
  • MPRA of SORT1 locus in HepG2
    Elements cloned into the pGL4.23 vector upstream of a minimal promoter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the SORT enhancer, using 3' to 5' direction.
    Loci: SORT1
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR281FRP
    released
  • MPRA of SORT1 locus in HepG2
    Elements cloned into the pGL4.23 vector upstream of a minimal promoter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the SORT1 enhancer.
    Loci: SORT1
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR058RIG
    released
  • MPRA of SORT1 locus in HepG2
    Elements cloned into the pGL4.23 vector upstream of a minimal promoter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the SORT1 enhancer.
    Loci: SORT1
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR259LFO
    released
  • MPRA of LDLR locus in HepG2
    Elements cloned into the pGL4.11 vector upstream of the reporter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the LDLR promoter.
    Loci: LDLR
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR739VGY
    released
  • MPRA of LDLR locus in HepG2
    Elements cloned into the pGL4.11 vector upstream of the reporter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the LDLR promoter.
    Loci: LDLR
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR912KDN
    released
  • MPRA of F9 locus in HepG2
    Elements cloned into the pGL4.11 vector upstream of the reporter, with barcode located in the 3' UTR of the reporter. Elementas are generated by error-prone PCR of the F9 promoter.
    Loci: F9
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR352YKN
    released
  • MPRA in HepG2
    Homo sapiens HepG2, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR811QES
    released
  • MPRA in HepG2
    Homo sapiens HepG2, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR833BYO
    released
  • MPRA in HepG2
    Homo sapiens HepG2, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR554UKK
    released
  • MPRA in HepG2
    Homo sapiens HepG2, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: DNase hypersensitive sites, histone modifications, synthetic elements
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR463DWN
    released
  • MPRA in HepG2
    Homo sapiens HepG2, 24 hours post-nucleic acid delivery time genetically modified (episome) using transient transfection
    Elements selection method: DNase hypersensitive sites, histone modifications, synthetic elements
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR447RLV
    released
  • MPRA in HepG2
    Homo sapiens HepG2 genetically modified (episome) using transient transfection
    Elements selection method: sequence variants
    Lab: Ryan Tewhey, JAX
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR885ULM
    released
  • MPRA in HepG2
    Elements cloned into the lentiMPRA vector upstream of a minimal promoter, with barcode located in the 5' UTR of the reporter. Elements test HepG2 enhancers and promoters of all protein-coding genes.
    Elements selection method: DNase hypersensitive sites
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR022GQD
    released
  • MPRA in HepG2
    Elements cloned into the pGL4 vector upstream of a minimal promoter. Test of a mix of short, medium, and long elements in parallel.
    Elements selection method: DNase hypersensitive sites
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR215YXA
    released
  • MPRA in HepG2
    Elements cloned into the pGL4 vector upstream of a minimal promoter. Test of the same set of elements in both the forward and reverse orientations in parallel.
    Elements selection method: DNase hypersensitive sites
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR881ERG
    released
  • MPRA in HepG2
    Elements and barcodes cloned into the 3' UTR of a reporter in a lentiviral vector, using a mutant integrase to prevent genomic integration. One of nine methods testing element activity in parallel.
    Elements selection method: DNase hypersensitive sites
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR255GVC
    released
  • MPRA in HepG2
    Elements and barcodes cloned into the 3' UTR of a reporter in a lentiviral vector, using a wild type integrase to allow genomic integration. One of nine methods testing element activity in parallel.
    Elements selection method: DNase hypersensitive sites
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR069RCF
    released
  • MPRA in HepG2
    Elements cloned upstream of the reporter's minimal promoter, with barcode located in the 3' UTR of a reporter in a lentiviral vector, using a mutant integrase to prevent genomic integration. One of nine methods testing element activity in parallel.
    Elements selection method: DNase hypersensitive sites
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR202CHZ
    released
  • MPRA in HepG2
    Elements cloned upstream of the reporter's minimal promoter, with barcode located in the 3' UTR of a reporter in a lentiviral vector, using a wild type integrase to allow genomic integration. One of nine methods testing element activity in parallel.
    Elements selection method: DNase hypersensitive sites
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR478ESZ
    released
  • MPRA in HepG2
    Elements cloned upstream of the reporter's minimal promoter, with barcode located in the 5' UTR of a reporter in a lentiviral vector, using a mutant integrase to prevent genomic integration. One of nine methods testing element activity in parallel.
    Elements selection method: DNase hypersensitive sites
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR080JVM
    released
  • MPRA in HepG2
    Elements cloned upstream of the reporter's minimal promoter, with barcode located in the 5' UTR of a reporter in a lentiviral vector, using a wild type integrase to allow genomic integration. One of nine methods testing element activity in parallel.
    Elements selection method: DNase hypersensitive sites
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR839LDC
    released