Summary for ENCSR033VBW
Summary
- Status
- released
- Description
- These MPRA datasets screen a library of 2,440 candidate liver enhancers and controls for regulatory activity in HepG2 cells using nine different MPRA designs.
- Donor diversity
- single
- Assay
- MPRA
- Biosample summary
- HepG2 cell line, DNA cloning sample cloning host genetically modified (insertion) using transduction, genetically modified (insertion) using transient transfection
- Diseases
- Not reported
- Elements references
Attribution
ENCODE4 project
- Lab
- Nadav Ahituv, UCSF
- Award
- UM1HG009408 (Jay Shendure, UW)
- Project
- ENCODE
- Aliases
- nadav-ahituv:9way_series
- External resources
- None submitted
Experiments in ENCSR033VBW
Experiments
13 experiments
Accession | Assay | Examined loci | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR255GVC | MPRA | Homo sapiens HepG2 genetically modified (insertion) using transduction | Nadav Ahituv, UCSF | released | ||
| ENCSR069RCF | MPRA | Homo sapiens HepG2 genetically modified (insertion) using transduction | Nadav Ahituv, UCSF | released | ||
| ENCSR202CHZ | MPRA | Homo sapiens HepG2 genetically modified (insertion) using transduction | Nadav Ahituv, UCSF | released | ||
| ENCSR478ESZ | MPRA | Homo sapiens HepG2 genetically modified (insertion) using transduction | Nadav Ahituv, UCSF | released | ||
| ENCSR080JVM | MPRA | Homo sapiens HepG2 genetically modified (insertion) using transduction | Nadav Ahituv, UCSF | released | ||
| ENCSR839LDC | MPRA | Homo sapiens HepG2 genetically modified (insertion) using transduction | Nadav Ahituv, UCSF | released | ||
| ENCSR208DGH | MPRA | Homo sapiens HepG2 genetically modified (insertion) using transient transfection | Nadav Ahituv, UCSF | released | ||
| ENCSR787MOJ | MPRA | Homo sapiens HepG2 genetically modified (insertion) using transient transfection | Nadav Ahituv, UCSF | released | ||
| ENCSR760GMX | MPRA | Homo sapiens HepG2 genetically modified (insertion) using transient transfection | Nadav Ahituv, UCSF | released | ||
| ENCSR002UCW | MPRA | Homo sapiens HepG2 genetically modified (insertion) using transient transfection | Nadav Ahituv, UCSF | released | ||
| ENCSR049RIU | MPRA | Homo sapiens HepG2 genetically modified (insertion) using transient transfection | Nadav Ahituv, UCSF | released | ||
| ENCSR661ZUO | MPRA | Homo sapiens HepG2 genetically modified (insertion) using transient transfection | Nadav Ahituv, UCSF | released | ||
| ENCSR509EUX | MPRA | Homo sapiens HepG2 genetically modified (insertion) using transient transfection | Nadav Ahituv, UCSF | released |
Control experiments
14 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR932ZCL | control | Homo sapiens HepG2 genetically modified (insertion) using transduction | Nadav Ahituv, UCSF | released | |
| ENCSR579XDB | control | Homo sapiens HepG2 genetically modified (insertion) using transduction | Nadav Ahituv, UCSF | released | |
| ENCSR990ZAU | control | Homo sapiens HepG2 genetically modified (insertion) using transduction | Nadav Ahituv, UCSF | released | |
| ENCSR742NIM | control | Homo sapiens HepG2 genetically modified (insertion) using transduction | Nadav Ahituv, UCSF | released | |
| ENCSR468WFP | control | Homo sapiens HepG2 genetically modified (insertion) using transduction | Nadav Ahituv, UCSF | released | |
| ENCSR902NRZ | control | Homo sapiens HepG2 genetically modified (insertion) using transduction | Nadav Ahituv, UCSF | released | |
| ENCSR335DOI | control | Homo sapiens HepG2 genetically modified (insertion) using transient transfection | Nadav Ahituv, UCSF | released | |
| ENCSR642ECM | control | Homo sapiens HepG2 genetically modified (insertion) using transient transfection | Nadav Ahituv, UCSF | released | |
| ENCSR118NBQ | control | Homo sapiens HepG2 genetically modified (insertion) using transient transfection | Nadav Ahituv, UCSF | released | |
| ENCSR547NTG | control | Homo sapiens HepG2 genetically modified (insertion) using transient transfection | Nadav Ahituv, UCSF | released | |
| ENCSR383FIW | control | Homo sapiens HepG2 genetically modified (insertion) using transient transfection | Nadav Ahituv, UCSF | released | |
| ENCSR974CHK | control | Homo sapiens HepG2 genetically modified (insertion) using transient transfection | Nadav Ahituv, UCSF | released | |
| ENCSR356YBY | control | Homo sapiens HepG2 genetically modified (insertion) using transient transfection | Nadav Ahituv, UCSF | released | |
| ENCSR638VYO | control | Nadav Ahituv, UCSF | released |