Experiment summary for ENCSR946ZLI

Summary

Status
revoked
Assay
ChIP-seq (TF ChIP-seq)
Target
KLF13
Biosample summary
Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting human KLF13
Biosample Type
cell line
Replication type
isogenic
Description
eGFP-KLF13 ChIP-seq on human HEK293 cells.
Nucleic acid type
DNA
Size range
450-650

Attribution

ENCODE3 project
Lab
Michael Snyder, Stanford
Award
U54HG006996 (Michael Snyder, Stanford)
Project
ENCODE
External resources
Aliases
michael-snyder:HEK_eGFP-KLF13_FRT_ChIP
Date submitted
January 20, 2017
Date released
November 30, 2017
Submitter comment
Kundaje lab found this experiment falls in a relatively large collection of replicates across multiple ZNF TFs that are EXACTLY identical. This is definitely not co-binding TFs since the overlap and concordance is excessively high. It is also impossible to find expected motifs enriched in these peak regions. The peaks seem to be falling in AT repeat regions likely capturing some kind of eGFP ChIPing artifacts. This is confirmed visually in browser sessions.
Tags
Search for all Experiment with internal tag RegulomeDB_2_0Search for all Experiment with internal tag RegulomeDB_1_0Search for all Experiment with internal tag ENCYCLOPEDIAv5

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Antibody
Library
11HEK293 cell line genetically modified (insertion) using site-specific recombination targeting human KLF13ENCBS919NDBENCGM981DPFENCAB976SGGENCLB373FPZ
21HEK293 cell line genetically modified (insertion) using site-specific recombination targeting human KLF13ENCBS842XAEENCGM981DPFENCAB615WUNENCLB157EQB