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  • proliferation CRISPR screen in glutamatergic neuron
    Homo sapiens glutamatergic neuron, 14 days post differentiation genetically modified (CRISPRi) using CRISPR, (insertion) using CRISPR, (insertion) using TALEN inserting M. musculus Neurog2
    Lab: Yin Shen, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR800VEG
    released
  • proliferation CRISPR screen in neural progenitor cell
    Homo sapiens neural progenitor cell, 3 days post differentiation genetically modified (CRISPRi) using CRISPR, (insertion) using CRISPR, (insertion) using TALEN inserting M. musculus Neurog2
    Lab: Yin Shen, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR406XUG
    released
  • proliferation CRISPR screen in WTC11
    Homo sapiens WTC11, 0 days post differentiation genetically modified (CRISPRi) using CRISPR, (insertion) using CRISPR, (insertion) using TALEN inserting M. musculus Neurog2
    Lab: Yin Shen, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR536LLM
    released
  • CRISPRi proliferation screen in K562
    Functional characterization experiment for CRISPRi/dCas9-RYBP sparse-tiling proliferation screens at ~7500 cCREs around ~450 essential genes in K562
    Elements selection method: DNase hypersensitive sites
    Tiling modality: sparse peak
    Lab: Will Greenleaf, Stanford
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR398UPE
    released
  • CRISPRi proliferation screen in K562
    Functional characterization experiment for CRISPRi/dCas9-KRAB-WSR7EEE sparse-tiling proliferation screens at ~7500 cCREs around ~450 essential genes in K562
    Elements selection method: DNase hypersensitive sites
    Tiling modality: sparse peak
    Lab: Will Greenleaf, Stanford
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR377LWO
    released
  • CRISPRi proliferation screen in K562
    Functional characterization experiment for CRISPRi/dCas9-RYBP sparse-tiling proliferation screens at ~7500 cCREs around ~450 essential genes in K562
    Elements selection method: DNase hypersensitive sites
    Tiling modality: sparse peak
    Lab: Will Greenleaf, Stanford
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR546ILA
    released
  • CRISPRi proliferation screen in K562
    Functional characterization experiment for CRISPRi/dCas9-KRAB-WSR7EEE sparse-tiling proliferation screens at ~7500 cCREs around ~450 essential genes in K562
    Elements selection method: DNase hypersensitive sites
    Tiling modality: sparse peak
    Lab: Will Greenleaf, Stanford
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR237VMX
    released
  • CRISPRi proliferation screen in K562
    Functional characterization experiment for CRISPRi/dCas9-KRAB-MGA1-MGA2 sparse-tiling proliferation screens at ~7500 cCREs around ~450 essential genes in K562
    Elements selection method: DNase hypersensitive sites
    Tiling modality: sparse peak
    Lab: Will Greenleaf, Stanford
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR509FZL
    released
  • CRISPRi proliferation screen in K562
    Functional characterization experiment for dCas9-ZNF705-KRAB/CRISPRi tiling proliferation screens at a subset of cCREs around essential genes
    Elements selection method: DNase hypersensitive sites
    Tiling modality: peak tiling
    Lab: Will Greenleaf, Stanford
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR007UZQ
    released
  • CRISPRi proliferation screen in K562
    Functional characterization experiment for dCas9-RYBP/CRISPRi tiling proliferation screens at a subset of cCREs around essential genes
    Elements selection method: DNase hypersensitive sites
    Tiling modality: peak tiling
    Lab: Will Greenleaf, Stanford
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR039ZOS
    released
  • CRISPRi proliferation screen in K562
    Functional characterization experiment for dCas9-KRAB-WSR7EEE/CRISPRi tiling proliferation screens at a subset of cCREs around essential genes
    Elements selection method: DNase hypersensitive sites
    Tiling modality: peak tiling
    Lab: Will Greenleaf, Stanford
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR013IWY
    released
  • CRISPRi proliferation screen in K562
    Functional characterization experiment for dCas9-KRAB/CRISPRi tiling proliferation screens at a subset of cCREs around essential genes
    Elements selection method: DNase hypersensitive sites
    Tiling modality: peak tiling
    Lab: Will Greenleaf, Stanford
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR839FIS
    released
  • CRISPR dCas proliferation screen in K562
    Functional characterization experiment for dCas9 tiling proliferation screens at a subset of cCREs around essential genes
    Elements selection method: DNase hypersensitive sites
    Tiling modality: peak tiling
    Lab: Will Greenleaf, Stanford
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR294JZL
    released
  • CRISPR cutting proliferation screen of CTCF locus in K562
    Functional characterization experiment for Cas9/CRISPR fine-mapping proliferation screens at hit and non-hit CTCF motifs in loop anchors (and their partner anchors) from the CTCF growth screen
    Elements selection method: TF binding sites
    Loci: CTCF
    Tiling modality: peak tiling
    Lab: Will Greenleaf, Stanford
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR322MGX
    released
  • CRISPR cutting proliferation screen of CTCF locus in K562
    Functional characterization experiment for Cas9/CRISPR fine-mapping proliferation screens at hit and non-hit CTCF motifs in loop anchors (and their partner anchors) from the CTCF growth screen
    Elements selection method: TF binding sites
    Loci: CTCF
    Tiling modality: peak tiling
    Lab: Will Greenleaf, Stanford
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR056FSY
    released
  • CRISPR cutting proliferation screen of CTCF locus in K562
    Functional characterization experiment for tiling, Cas9/CRISPRk proliferation screens at CTCF motifs in loop anchors
    Elements selection method: TF binding sites
    Loci: CTCF
    Tiling modality: sparse peak
    Lab: Will Greenleaf, Stanford
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR904DYJ
    released
  • CRISPR cutting proliferation screen of CTCF locus in K562
    Functional characterization experiment for tiling, Cas9/CRISPRk proliferation screens at CTCF motifs in loop anchors
    Elements selection method: TF binding sites
    Loci: CTCF
    Tiling modality: sparse peak
    Lab: Will Greenleaf, Stanford
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR842CIE
    released
  • CRISPRi proliferation screen of CTCF locus in K562
    Functional characterization experiment for tiling, dCas9-KRAB/CRISPRi proliferation screens at CTCF motifs in loop anchors
    Elements selection method: TF binding sites
    Loci: CTCF
    Tiling modality: sparse peak
    Lab: Will Greenleaf, Stanford
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR223KWN
    released
  • CRISPRi proliferation screen of CTCF locus in K562
    Functional characterization experiment for tiling, dCas9-KRAB/CRISPRi proliferation screens at CTCF motifs in loop anchors
    Elements selection method: TF binding sites
    Loci: CTCF
    Tiling modality: sparse peak
    Lab: Will Greenleaf, Stanford
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR371TIR
    released
  • CRISPR dCas proliferation screen of CTCF locus in K562
    Functional characterization experiment for tiling, dCas9/CRISPRd proliferation screens at CTCF motifs in loop anchors
    Elements selection method: TF binding sites
    Loci: CTCF
    Tiling modality: sparse peak
    Lab: Will Greenleaf, Stanford
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR816GWF
    released
  • CRISPR dCas proliferation screen of CTCF locus in K562
    Functional characterization experiment for tiling, dCas9/CRISPRd proliferation screens at CTCF motifs in loop anchors
    Elements selection method: TF binding sites
    Loci: CTCF
    Tiling modality: sparse peak
    Lab: Will Greenleaf, Stanford
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR157EQV
    released
  • CRISPRa proliferation screen of CTCF locus in K562
    Functional characterization experiment for tiling, dCas9-VPR/CRISPRa proliferation screens at CTCF motifs in loop anchors
    Elements selection method: TF binding sites
    Loci: CTCF
    Tiling modality: sparse peak
    Lab: Will Greenleaf, Stanford
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR453GEJ
    released
  • CRISPRa proliferation screen of CTCF locus in K562
    Functional characterization experiment for tiling, dCas9-VPR/CRISPRa proliferation screens at CTCF motifs in loop anchors
    Elements selection method: TF binding sites
    Loci: CTCF
    Tiling modality: sparse peak
    Lab: Will Greenleaf, Stanford
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR501RAG
    released
  • CRISPR dCas proliferation screen of multiple loci in K562
    Tiling, dCas9/CRISPRd proliferation screen at the GATA1, MYB, and ZMYND8 loci
    Loci: GATA1, MYB, ZMYND8
    Tiling modality: full tiling
    Lab: Will Greenleaf, Stanford
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR138FGY
    released
  • CRISPR dCas proliferation screen of multiple loci in K562
    Tiling, dCas9/CRISPRd proliferation screen at the GATA1, MYB, and ZMYND8 loci
    Loci: GATA1, MYB, ZMYND8
    Tiling modality: full tiling
    Lab: Will Greenleaf, Stanford
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR686WRO
    released