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Summary for ENCSR447YYN

doi:10.17989/ENCSR447YYN

Supersedes ENCSR977QPF

Summary

Status
released
Description
Reference epigenome for human GM12878 cell line
Donor diversity
single
Assay
polyA plus RNA-seq, ChIP-seq, RNA-seq, small RNA-seq, whole-genome shotgun bisulfite sequencing, microRNA-seq, DNase-seq, ATAC-seq
Target
POLR2AphosphoS5, H3K4me1, H3K27ac, H3K36me3, H3K9me3, H3K27me3, EP300, POLR2A, H3K4me3, CTCF
Biosample summary
Homo sapiens GM12878
Diseases
Not reported

Attribution

ENCODE3 project
Lab
ENCODE Consortium
Award
U41HG006992 (J. Michael Cherry, Stanford)
Project
ENCODE
External resources

Experiments in ENCSR447YYN

Experiments
17 experiments
Accession
Assay
Target
Biosample summary
Lab
Status
Cart
ENCSR000AEDpolyA plus RNA-seqHomo sapiens GM12878Thomas Gingeras, CSHL
released
ENCSR000AKCChIP-seqH3K27acHomo sapiens GM12878Bradley Bernstein, Broad
released
ENCSR000AKDChIP-seqH3K27me3Homo sapiens GM12878Bradley Bernstein, Broad
released
ENCSR000AKFChIP-seqH3K4me1Homo sapiens GM12878Bradley Bernstein, Broad
released
ENCSR000AOXChIP-seqH3K9me3Homo sapiens GM12878Bradley Bernstein, Broad
released
ENCSR000BGDChIP-seqPOLR2AHomo sapiens GM12878Richard Myers, HAIB
released
ENCSR000BIFChIP-seqPOLR2AphosphoS5Homo sapiens GM12878Richard Myers, HAIB
released
ENCSR000DRWChIP-seqH3K36me3Homo sapiens GM12878John Stamatoyannopoulos, UW
released
ENCSR000DZDChIP-seqEP300Homo sapiens GM12878Michael Snyder, Stanford
released
ENCSR000DZNChIP-seqCTCFHomo sapiens GM12878Michael Snyder, Stanford
released
ENCSR000EMTDNase-seqHomo sapiens GM12878John Stamatoyannopoulos, UW
released
ENCSR057BWOChIP-seqH3K4me3Homo sapiens GM12878Bradley Bernstein, Broad
released
ENCSR770HBFmicroRNA-seqHomo sapiens GM12878Ali Mortazavi, UCI
released
ENCSR890UQOwhole-genome shotgun bisulfite sequencingHomo sapiens GM12878Richard Myers, HAIB
released
ENCSR000AEJsmall RNA-seqHomo sapiens GM12878Thomas Gingeras, CSHL
released
ENCSR000AEERNA-seqHomo sapiens GM12878Brenton Graveley, UConn
released
ENCSR637XSCATAC-seqHomo sapiens GM12878Michael Snyder, Stanford
released
Control experiments
7 control experiments
Accession
Control type
Biosample summary
Lab
Status
Cart
ENCSR000AKJinput libraryHomo sapiens GM12878Bradley Bernstein, Broad
released
ENCSR000BGJinput libraryHomo sapiens GM12878Richard Myers, HAIB
released
ENCSR000BGHinput libraryHomo sapiens GM12878Richard Myers, HAIB
released
ENCSR000DRVinput libraryHomo sapiens GM12878John Stamatoyannopoulos, UW
released
ENCSR000EAFIgGHomo sapiens GM12878Michael Snyder, Stanford
released
ENCSR000EYXinput libraryHomo sapiens GM12878Sherman Weissman, Yale
released
ENCSR142RECinput libraryHomo sapiens GM12878Bradley Bernstein, Broad
released

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