1. Experiments
  2. small RNA-seq
  3. Homo sapiens
  4. GM12878

Experiment summary for ENCSR000AEJ

doi:10.17989/ENCSR000AEJ

Summary

Status
released
Assay
small RNA-seq
Biosample summary
Homo sapiens GM12878
Biosample Type
cell line
Replication type
isogenic
Description
The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Treatments
Tobacco Acid Pyrophosphatase for 1 hour
Nucleic acid type
RNA
Depleted in
rRNA
Size range
<200
Fragmentation methods
see document
Strand specificity
Strand-specific (forward)

Attribution

ENCODE3 project
Lab
Thomas Gingeras, CSHL
Award
U54HG007004 (Thomas Gingeras, CSHL)
Project
ENCODE
External resources
References
Aliases
encode:evaluation_set_GM12878_smRNA_Gingeras
Date submitted
June 13, 2013
Date released
June 30, 2014
Reference Epigenome
ENCSR447YYN 
Tags
Search for all Experiment with internal tag ENCYCLOPEDIAv2

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Library
11Homo sapiens GM12878 cell lineENCBS089RNAENCLB049ZZZ
21Homo sapiens GM12878 cell lineENCBS090RNAENCLB050ZZZ

Files

Filter files

File format
Output type
Replicates

No files to display.