Summary for ENCSR372WXC
doi:10.17989/ENCSR372WXC
Summary
- Status
- released
- Description
- Reference epigenome for human HEK293 cell line
- Donor diversity
- single
- Assay
- ChIP-seq
- Target
- H3K4me1, H3K27ac, H3K36me3, CTCF, H3K9me3, H3K4me3
- Biosample summary
- HEK293 cell line genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF707, genetically modified (insertion) using site-specific recombination targeting H. sapiens ZEB2, genetically modified (insertion) using site-specific recombination targeting H. sapiens SP7, genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB1, genetically modified (insertion) using site-specific recombination targeting H. sapiens AEBP2, genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF572, genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF165, genetically modified (insertion) using site-specific recombination targeting H. sapiens SP2, genetically modified (insertion) using site-specific recombination targeting H. sapiens PRDM12, genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF423, genetically modified (insertion) using site-specific recombination targeting H. sapiens MAZ, genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF800, genetically modified (insertion) using site-specific recombination targeting H. sapiens ZFP41, genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF18, genetically modified (insertion) using site-specific recombination targeting H. sapiens CTCF, genetically modified (insertion) using site-specific recombination targeting H. sapiens ZSCAN4, genetically modified (insertion) using site-specific recombination targeting H. sapiens SALL4, genetically modified (insertion) using site-specific recombination targeting H. sapiens ZFP62, genetically modified (insertion) using site-specific recombination targeting H. sapiens ZSCAN5A, genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF264, genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF32, genetically modified (insertion) using site-specific recombination targeting H. sapiens ZFP64, genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF655, genetically modified (insertion) using site-specific recombination targeting H. sapiens ATF2
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
Experiments in ENCSR372WXC
Experiments
6 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR000FCH | ChIP-seq | H3K27ac | Homo sapiens HEK293 | Peggy Farnham, USC | released | |
| ENCSR617IFZ | ChIP-seq | CTCF | Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens CTCF | Michael Snyder, Stanford | released | |
| ENCSR000FCG | ChIP-seq | H3K4me1 | Homo sapiens HEK293 | Peggy Farnham, USC | released | |
| ENCSR910LIE | ChIP-seq | H3K36me3 | Homo sapiens HEK293 | Peggy Farnham, USC | released | |
| ENCSR000DTU | ChIP-seq | H3K4me3 | Homo sapiens HEK293 | John Stamatoyannopoulos, UW | released | |
| ENCSR000FCJ | ChIP-seq | H3K9me3 | Homo sapiens HEK293 | Peggy Farnham, USC | released |
Control experiments
28 control experiments
Accession | Control type | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR000EVA | input library | Homo sapiens HEK293 | Peggy Farnham, USC | released | ||
| ENCSR598OXI | HEK293 cell line genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF707, genetically modified (insertion) using site-specific recombination targeting H. sapiens ZEB2, genetically modified (insertion) using site-specific recombination targeting H. sapiens SP7, genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB1, genetically modified (insertion) using site-specific recombination targeting H. sapiens AEBP2, genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF572, genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF165, genetically modified (insertion) using site-specific recombination targeting H. sapiens SP2, genetically modified (insertion) using site-specific recombination targeting H. sapiens PRDM12, genetically modified (insertion) using site-specific recombination targeting H. sapiens MAZ, genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF423, genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF800, genetically modified (insertion) using site-specific recombination targeting H. sapiens ZFP41, genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF18, genetically modified (insertion) using site-specific recombination targeting H. sapiens CTCF, genetically modified (insertion) using site-specific recombination targeting H. sapiens SALL4, genetically modified (insertion) using site-specific recombination targeting H. sapiens ZSCAN4, genetically modified (insertion) using site-specific recombination targeting H. sapiens ZFP62, genetically modified (insertion) using site-specific recombination targeting H. sapiens ZSCAN5A, genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF264, genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF32, genetically modified (insertion) using site-specific recombination targeting H. sapiens ZFP64, genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF655, genetically modified (insertion) using site-specific recombination targeting H. sapiens ATF2 | J. Michael Cherry, Stanford | released | |||
| ENCSR007GUS | input library | Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens CTCF | Michael Snyder, Stanford | released | ||
| ENCSR049NDP | input library | Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF572 | Michael Snyder, Stanford | released | ||
| ENCSR110ZVM | input library | Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF264 | Michael Snyder, Stanford | released | ||
| ENCSR123TVS | input library | Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZFP62 | Michael Snyder, Stanford | released | ||
| ENCSR236FPN | input library | Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZEB2 | Michael Snyder, Stanford | released | ||
| ENCSR260MAS | input library | Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB1 | Michael Snyder, Stanford | released | ||
| ENCSR278MZO | input library | Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens SALL4 | Michael Snyder, Stanford | released | ||
| ENCSR311DYU | input library | Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF800 | Michael Snyder, Stanford | released | ||
| ENCSR316OQD | input library | Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF655 | Michael Snyder, Stanford | released | ||
| ENCSR361UQO | input library | Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF707 | Michael Snyder, Stanford | released | ||
| ENCSR398UVH | input library | Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZSCAN5A | Michael Snyder, Stanford | released | ||
| ENCSR468NLK | input library | Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF165 | Michael Snyder, Stanford | released | ||
| ENCSR499OOH | input library | Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF18 | Michael Snyder, Stanford | released | ||
| ENCSR499QIO | input library | Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZSCAN4 | Michael Snyder, Stanford | released | ||
| ENCSR523KUQ | input library | Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ATF2 | Michael Snyder, Stanford | released | ||
| ENCSR537CWQ | input library | Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens SP7 | Michael Snyder, Stanford | released | ||
| ENCSR603CJM | input library | Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF423 | Michael Snyder, Stanford | released | ||
| ENCSR679WSJ | input library | Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF32 | Michael Snyder, Stanford | released | ||
| ENCSR736BTL | input library | Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens SP2 | Michael Snyder, Stanford | released | ||
| ENCSR782QKO | input library | Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens MAZ | Michael Snyder, Stanford | released | ||
| ENCSR840JVQ | input library | Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZFP41 | Michael Snyder, Stanford | released | ||
| ENCSR851FFP | input library | Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens AEBP2 | Michael Snyder, Stanford | released | ||
| ENCSR860UAT | input library | Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens PRDM12 | Michael Snyder, Stanford | released |