Experiment summary for ENCSR000BPL
doi:10.17989/ENCSR000BPL
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- POLR2AphosphoS5
- Biosample summary
- Homo sapiens SK-N-MC
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- POLR2AphosphoS5 ChIP-seq protocol v041610.1 on human SK-N-MC.
- Nucleic acid type
- DNA
- Fragmentation methods
- see document
- Platform
- Illumina Genome Analyzer IIx
- Controls
Attribution
ENCODE2 project
- Lab
- Richard Myers, HAIB
- Award
- U54HG004576 (Richard Myers, HAIB)
- Project
- ENCODE
- External resources
- Date submitted
- January 23, 2012
- Date released
- February 29, 2012
- Reference Epigenome
- ENCSR394KIB
- Annotation (gkmsvm-model)
- Submitter comment
- ChIP-seq against POLR2AphosphoS5 using SK-N-MC cell line which was previously described as a neuroepithelioma (ATCC HTB-10). However recent evidence reveals it is Ewing's Sarcoma (www.ncbi.nlm.nih.gov/pubmed/15548687, www.ncbi.nlm.nih.gov/biosample/3151999, www.ncbi.nlm.nih.gov/pubmed/25453903).
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Antibody | Library |
|---|---|---|---|---|---|
| 1 | 1 | Homo sapiens SK-N-MC cell line | ENCBS426ENC | ENCAB000AOD | ENCLB559JFQ |
| 2 | 1 | Homo sapiens SK-N-MC cell line | ENCBS426ENC | ENCAB000AOD | ENCLB559KAM |