- TF ChIP-seq4566
- Histone ChIP-seq3625
- Control ChIP-seq2682
- DNase-seq1582
- scRNA-seq1188
- total RNA-seq901
- polyA plus RNA-seq844
- shRNA RNA-seq668
- Mint-ChIP-seq577
- ATAC-seq441
- RNA microarray291
- CRISPR RNA-seq288
- microRNA-seq272
- WGBS268
- DNAme array257
- Control eCLIP238
- eCLIP231
- RRBS218
- small RNA-seq216
- RNA Bind-n-Seq199
- RAMPAGE168
- genotyping array142
- CAGE121
- Control Mint-ChIP-seq119
- Repli-seq119
- microRNA counts115
- siRNA RNA-seq113
- long read RNA-seq107
- ChIA-PET105
- Hi-C87
- CRISPRi RNA-seq77
- RIP-seq73
- MRE-seq68
- Repli-chip63
- MeDIP-seq55
- WGS50
- PAS-seq47
- GM DNase-seq46
- FAIRE-seq37
- RIP-chip32
- polyA minus RNA-seq32
- RNA-PET31
- Bru-seq16
- BruChase-seq16
- MS-MS14
- 5C13
- BruUV-seq8
- TAB-seq8
- snATAC-seq8
- iCLIP7
- H3K4me3716
- H3K27ac616
- H3K4me1587
- H3K36me3570
- H3K27me3560
- H3K9me3545
- CTCF467
- H3K9ac191
- POLR2A174
- H3K4me2134
- EP30097
- RAD2177
- H3K79me256
- Methylcytidine55
- H2AFZ51
- POLR2AphosphoS549
- H4K20me142
- JUN32
- NR3C132
- REST32
- CEBPB30
- EZH229
- MAX27
- MYC26
- SMC322
- JUND20
- FOSL219
- GATA119
- H3K9me219
- ama-119
- GABPA18
- YY118
- EZH2phosphoT48717
- JUNB17
- USF117
- BCL316
- ELF116
- H3F3A16
- SIN3A16
- TAF116
- CHD115
- CREB115
- MAFK15
- MAZ15
- SUZ1215
- USF215
- ZBTB3315
- bromodeoxyuridine15
- ATF314
- NRF114
- whole organism2652
- K5622086
- HepG21467
- forelimb1072
- A549514
- GM12878397
- MCF-7282
- HEK293281
- liver250
- middle frontal area 46224
- H1220
- stomach202
- cell-free sample199
- heart194
- SK-N-SH179
- adrenal gland169
- spleen166
- HeLa-S3159
- lung152
- kidney136
- forebrain127
- midbrain118
- hindbrain116
- IMR-90111
- brain108
- sigmoid colon108
- activated CD4-positive, alpha-beta T cell107
- T-cell106
- transverse colon105
- heart left ventricle101
- foreskin keratinocyte99
- macrophage98
- limb96
- MEL94
- CD4-positive, alpha-beta T cell86
- S286
- embryonic facial prominence86
- upper lobe of left lung86
- CD4-positive, alpha-beta memory T cell85
- head of caudate nucleus84
- HCT11680
- CD14-positive monocyte79
- H979
- common myeloid progenitor, CD34-positive78
- mesenchymal stem cell78
- ovary77
- naive thymus-derived CD4-positive, alpha-beta T cell76
- pancreas76
- neural tube75
- small intestine73
- blood4286
- bodily fluid4286
- epithelium3541
- exocrine gland2298
- endocrine gland2127
- liver1802
- brain1588
- limb1505
- embryo1213
- lung1096
- connective tissue867
- skin of body733
- intestine694
- musculature of body670
- kidney647
- heart529
- mammary gland478
- large intestine469
- bone element437
- colon399
- bone marrow377
- immune organ336
- extraembryonic component317
- spleen306
- stomach294
- vasculature289
- blood vessel267
- penis264
- uterus248
- pancreas240
- placenta237
- adrenal gland169
- gonad165
- esophagus163
- arterial blood vessel153
- prostate gland151
- lymph node150
- adipose tissue132
- small intestine107
- spinal cord100
- thymus97
- ovary83
- testis83
- vein81
- breast80
- eye80
- thyroid gland74
- nerve70
- lymphoid tissue66
- vagina37
- cancer cell5683
- hematopoietic cell4673
- leukocyte4477
- epithelial cell3202
- T cell1059
- stem cell957
- B cell917
- connective tissue cell655
- embryonic cell628
- fibroblast563
- neural cell308
- myeloid cell276
- neuroblastoma cell209
- induced pluripotent stem cell185
- progenitor cell173
- keratinocyte160
- endothelial cell137
- monocyte83
- myoblast69
- lymphoblast63
- cardiocyte59
- melanocyte48
- smooth muscle cell46
- pericyte8
- adult9404
- embryonic5615
- unknown2186
- child2032
- newborn354
- postnatal251
- L1 larva199
- young adult179
- L4 larva159
- late embryonic142
- prepupa139
- wandering third instar larva124
- L3 larva119
- L2 larva106
- mixed stage (embryonic)78
- third instar larva78
- pupa40
- early embryonic24
- L4/young adult6
- first instar larva5
- larva5
- midembryonic4
- second instar larva4
- dauer2
- dexamethasone293
- anti-CD3 and anti-CD28 coated beads253
- Interleukin-2102
- all-trans-retinoic acid82
- lipopolysaccharide81
- ethanol57
- calcium52
- Interleukin-442
- dimethyl sulfoxide42
- 17β-estradiol38
- doxycycline hyclate34
- copper(II) sulfate32
- Interleukin-12 subunit alpha25
- Interleukin-12 subunit beta25
- Activin A24
- Bone morphogenetic protein 424
- Fibroblast growth factor 224
- tumor necrosis factor20
- Interferon gamma19
- interferon alpha19
- 20-hydroxyecdysone16
- afimoxifene15
- phorbol 13-acetate 12-myristate15
- ionomycin14
- Interferon-gamma antibody13
- Interleukin-1513
- Interleukin-4 antibody13
- lipoprotein A13
- TNF-alpha12
- Interleukin-1b10
- Interleukin-2310
- erythropoietin9
- hydrocortisone succinate9
- interleukin-39
- kit ligand9
- CpG ODN8
- estradiol8
- forskolin8
- irradiation8
- pyruvate8
- Interleukin-77
- anti-CD1807
- DMSO6
- G-CSF6
- darkness6
- indole-3-acetic acid6
- 17β-hydroxy-17-methylestra-4,9,11-trien-3-one5
- AR-424
- Bortezomib4
- C6464
- Chaetocin4
- Crizotinib4
- GSK J44
- Galeterone4
- JQ14
- MB-34
- MEDII4
- Panobinostat4
- Sindbis virus4
- Vorinostat4
- bisphenol A4
- cadmium dichloride4
- genistein4
- pravastatin4
- 17β-hydroxy-5α-androstan-3-one3
- Interleukin-63
- NAI-N33
- UT1893
- caffeine3
- lactate3
- rotenone3
- sodium butyrate3
- tamoxifen3
- zinc dichloride3
- 22-hydroxycholesterol2
- ARS-8532
- EED2262
- Interleukin-102
- Interleukin-17A2
- Methotrexate2
- NAz-N32
- NCT-5032
- SGC-CBP302
- cold shock treatment2
- hydroxyurea2
- insulin2
- mimosine2
- paraquat2
- retinoic acid2
- serum free2
- thymidine2
- 4-hydroxy-tamoxifen1
- 2-Deoxy-D-glucose1
- Interferon alpha-21
- Interleukin-1 beta1
- Interleukin-211
- Sendai virus1
- Transforming growth factor beta-11
- cisplatin1
- differentiation1
- doxycycline1
- flavopiridol1
- heat shock treatment1
- non-ionizing ultraviolet radiation exposure1
- oligomycin1
- resveratrol1
- trichostatin A1
- vorinostat1
- fastq19721
- bam18353
- bigWig16773
- bed narrowPeak10633
- bigBed narrowPeak10631
- tsv4317
- bed idr_ranked_peak3622
- bed broadPeak2541
- bigBed broadPeak2082
- bed bed3+1664
- bigBed bed3+1501
- starch1488
- tagAlign1368
- sra672
- tar593
- gtf351
- bed bedRnaElements288
- bigBed bedRnaElements288
- bed bedMethyl284
- bigBed bedMethyl284
- idat274
- bed tss_peak235
- bigBed tss_peak235
- gff gff3235
- bed bed9+165
- bigBed bed9+165
- bed idr_peak134
- bigBed idr_peak134
- bed bed6+115
- bigBed bed6+115
- rcc115
- hic93
- bed bedGraph73
- bed bedLogR64
- bigBed bedLogR63
- sam59
- wig59
- bedpe53
- bed bed1243
- bigBed bed1243
- bigInteract43
- bed bedExonScore27
- bigBed bedExonScore27
- csfasta25
- vcf21
- hdf519
- bed bed918
- bigBed bed918
- csqual13
- fasta9
- bed peptideMapping8
- bigBed peptideMapping8
- bed bed37
- bigBed bed37
- bed modPepMap6
- bed pepMap6
- bigBed modPepMap6
- bigBed pepMap6
- CEL4
- Illumina HiSeq 20006388
- Illumina HiSeq 25004539
- Illumina HiSeq 40003156
- Illumina Genome Analyzer IIx2418
- Illumina NextSeq 5001914
- Illumina Genome Analyzer977
- Illumina NovaSeq 6000883
- Illumina Genome Analyzer II765
- Illumina Infinium Methylation EPIC BeadChip153
- Illumina Genome Analyzer I135
- Illumina Genome Analyzer IIe97
- Illumina HiSeq X Ten77
- Pacific Biosciences Sequel II66
- Illumina - Methylation 450K BeadChip62
- Illumina Infinium Omni5Exome-4 Kit59
- nCounter Mouse V1.3 miRNA Expression array58
- Applied Biosystems SOLiD System 3 Plus50
- Illumina MiSeq42
- nCounter Human V2 miRNA Expression array38
- Nimbelgen - Human 3x720K Whole Genome CGH Tiling Array34
- Pacific Biosciences Sequel25
- Oxford Nanopore MinION17
- Mouse 385K Whole Genome CGH Tiling Array16
- nCounter Mouse V1.5 miRNA Expression array14
- Nimblegen - Human 6x630K CGH Whole Genome tiling array12
- Illumina HiSeq 10008
- Nimblegen - Human 2.1M Whole-Genome CGH Tiling Array v2.08
- nCounter Mouse V1.2 miRNA Expression array5
- Affymetrix - Human Exon 1.0 ST V2 tilling array4
- Mouse 3x720K Whole Genome CGH Tiling Array2
- Roche 454 Genome Sequencer FLX2
- Pacific Biosciences RS II1
- 185
- 20191
- 2584
- 2790
- 2859
- 299
- 30119
- 3173
- 32526
- 3344
- 3478
- 3545
- 364659
- 3779
- 387
- 3941
- 40202
- 4123
- 4215
- 43145
- 44115
- 45337
- 4660
- 472
- 4835
- 4915
- 504100
- 51394
- 522
- 531
- 55170
- 5610
- 58697
- 591
- 611
- 621
- 6815
- 705
- 712
- 7210
- 7330
- 7426
- 75809
- 763547
- 7842
- 7924
- 80103
- 822
- 8310
- 841
- 856
- 869
- 875
- 881
- 904
- 941
- 952
- 968
- 981
- 999
- 1003249
- 1011363
- 10811
- 1131
- 1172
- 12511
- 13040
- 1311
- 1323
- 1333
- 1362
- 1393
- 1491
- 15076
- 151128
- 1526
- 1761
- 1911
- 20217
- 2501
- 3002
- 4581
- >2002937
- 300-5001731
- 200-6001484
- 450-6501172
- 200-8001082
- 150-350537
- 175-300469
- 250-450372
- 350-600365
- <30318
- <200216
- 200-500183
- 20-20170
- 200-7000158
- 120-200128
- 300-600108
- 200-40097
- 250-40092
- 180-50084
- 200-75082
- 19-2566
- 200-25048
- 150-25047
- 300-100043
- 400-50040
- 150-15035
- 175-50035
- 299-30028
- 40-4027
- 100-30026
- 350-45026
- 300-80019
- 100-35017
- 100-50017
- >17517
- 150-40015
- 150-100013
- 240-42013
- 50-30011
- 200-10009
- 200-3008
- 200-15006
- 200-2006
- 350-4806
- 300-3505
- 150-3004
- 250-4304
- 100-1003
- 175-2503
- 175-2753
- 200-2753
- 200-4503
- 2000-100003
- 350-6503
- 400-4003
- 10-502
- 200-6502
- 250-4702
- 267-4002
- 400-6002
- 600-50002
- >10002
- 120-2801
- 125-2781
- 138-10001
- 149-5121
- 151-3471
- 151-3791
- 151-4991
- 153-3091
- 153-4991
- 156-3121
- 157-4971
- 159-1961
- 165-2031
- 168-3671
- 169-2251
- 170-2021
- 171-2011
- 172-14521
- 172-2001
- 175-1961
- 175-2251
- 177-2071
- 184-2241
- 185-2341
- 186-7471
- 187-16061
- 200-3251
- 200-4911
- 200-5941
- 200-7121
- 200-7641
- 200-9001
- 208-4421
- 209-8911
- 210-4801
- 213-4511
- 215-10001
- 217-4751
- 221-10001
- 222-3181
- 225-3001
- 225-3501
- 232-10001
- 244-3011
- 266-4701
- 268-4781
- 270-5001
- 275-4701
- 280-5091
- 285-4771
- 287-3471
- 287-4781
- 289-4811
- 2963-29631
- 300-4001
- 300-7001
- 3062-30621
- 309-3651
- 312-5061
- 312-5311
- 325-4251
- 325-4501
- 354-5981
- 354-6531
- 371-3711
- 373-3731
- 387-4661
- 425-5191
- 442-4421
- 452-5161
- 471-5271
- 472-5541
- 472-5581
- 482-5601
- 487-5711
- 493-6621
- 500-50001
- 555-6171
- 555-6781
- Bradley Bernstein, Broad3403
- Michael Snyder, Stanford2959
- John Stamatoyannopoulos, UW2309
- Richard Myers, HAIB1848
- Barbara Wold, Caltech1541
- Bing Ren, UCSD1387
- Kevin White, UChicago1350
- Brenton Graveley, UConn1057
- Thomas Gingeras, CSHL739
- Joseph Costello, UCSF595
- Gene Yeo, UCSD476
- Ali Mortazavi, UCI403
- Valerie Reinke, Yale363
- Susan Celniker, LBNL356
- Tim Reddy, Duke298
- Robert Waterston, UW218
- Chris Burge, MIT199
- Joe Ecker, Salk193
- Gregory Crawford, Duke162
- Ross Hardison, PennState128
- Peggy Farnham, USC125
- Stephen Montgomery, Stanford100
- Yijun Ruan, JAX99
- Alexander Hoffmann, UCLA98
- Xiang-Dong Fu, UCSD97
- Vishwanath Iyer, UTA85
- Piero Carninci, RIKEN78
- David Gilbert, FSU77
- Manuel Garber, UMass74
- Will Greenleaf, Stanford73
- Sherman Weissman, Yale65
- Erez Aiden, Baylor48
- Kevin Struhl, HMS43
- Scott Tenenbaum, SUNY-Albany42
- Mats Ljungman, UMichigan40
- David MacAlpine, Duke39
- Jason Lieb, UNC37
- John Rinn, Broad35
- Christina Leslie, MSKCC32
- Eric Lécuyer, IRCM30
- Brian Oliver, NIH27
- Job Dekker, UMass27
- Morgan Giddings, UNC14
- Paul Khavari, Stanford13
- Rob Spitale, UCI8
- Feng Yue, PSU7
- Jussi Taipale7
- Alexander Urban, Stanford6
- Angela Brooks, UCSC6
- Christine Disteche, UW6
- Christopher Vollmers, UCSC6
- Ramesh Shivdasani6
- Roderic Guigo, CRG6
- Ana Conesa, UF5
- Keji Zhao, NIH5
- Andrew Z. Fire, Stanford4
- Yin Shen, UCSF4
- Benjamin Ebert, Broad4
- Barbara Graves3
- Ernest Fraenkel, MIT2
- Marjorie Brand, OHRI2
- Terry Orr-Weaver, MIT2
- Franklin Pugh1
- Hai-Hui Xue1
- extremely low read depth345
- missing control alignments90
- missing antibody75
- extremely low spot score71
- control extremely low read depth25
- missing compliant biosample characterization20
- missing queried_RNP_size_range19
- not compliant biosample characterization14
- extremely low coverage11
- extremely low read length10
- file validation error8
- missing raw data in replicate7
- missing donor5
- missing footprints4
- missing analysis_step_run3
- inconsistent read count2
- missing possible_controls2
- inconsistent control1
- inconsistent donor1
- mixed strand specificities1
- insufficient read depth1775
- control insufficient read depth962
- insufficient read length580
- unreplicated experiment414
- poor library complexity350
- severe bottlenecking347
- missing spikeins190
- partially characterized antibody141
- insufficient replicate concordance134
- missing documents130
- insufficient coverage110
- low FRiP score103
- insufficient number of reproducible peaks59
- antibody not characterized to standard26
- missing possible_controls26
- low TSS enrichment21
- uncharacterized antibody11
- low non-redundant PET3
- insufficient number of aligned reads2
- missing RNA fragment size2
- missing input control2
- mild to moderate bottlenecking4376
- low read length3292
- missing biosample characterization3209
- low read depth3078
- missing genetic modification characterization2516
- moderate library complexity2130
- lacking processed data1887
- mixed read lengths1694
- missing controlled_by1582
- inconsistent platforms1370
- inconsistent control read length913
- missing genetic modification reagents857
- antibody characterized with exemption835
- missing compliant biosample characterization781
- borderline replicate concordance668
- low spot score667
- control low read depth654
- missing external identifiers262
- improper control_type of control experiment207
- inconsistent control run_type158
- missing analysis_step_run158
- low replicate concordance148
- missing genotype116
- mixed run types101
- inconsistent assembly95
- moderate number of reproducible peaks87
- matching md5 sums81
- moderate TSS enrichment57
- missing spikeins45
- borderline number of aligned reads41
- low coverage38
- missing footprints23
- missing fragmentation method23
- borderline microRNAs expressed17
- missing lambda C conversion rate15
- missing control_type of control experiment11
- unexpected target of control experiment11
- low lambda C conversion rate5
- high lambda C methylation ratio3
- low intra/inter-chr PET ratio3
- missing paired_with2
- inconsistent paired_with1
- low total read pairs1
- not compliant biosample characterization1
Showing 25 of 21473 results
- DNase-seq of thymusMus musculus C57BL/6JxCAST/EiJ thymus tissue male (4 days)Lab: John Stamatoyannopoulos, UWProject: ENCODE
- DNase-seq of lungMus musculus C57BL/6JxCAST/EiJ lung tissue male (4 days)Lab: John Stamatoyannopoulos, UWProject: ENCODE
- DNase-seq of kidneyMus musculus C57BL/6JxCAST/EiJ kidney tissue male (2 months)Lab: John Stamatoyannopoulos, UWProject: ENCODE
- DNase-seq of heartMus musculus C57BL/6JxCAST/EiJ heart tissue female (10 days)Lab: John Stamatoyannopoulos, UWProject: ENCODE
- DNase-seq of adrenal glandMus musculus C57BL/6JxCAST/EiJ adrenal gland tissue female (2 months)Lab: John Stamatoyannopoulos, UWProject: ENCODE
- Histone ChIP-seq of macrophageMus musculus C57BL/6 macrophageTarget: H3K27acLab: Alexander Hoffmann, UCLAProject: GGR
- Histone ChIP-seq of macrophageMus musculus C57BL/6 macrophageTarget: H3K4me3Lab: Alexander Hoffmann, UCLAProject: GGR
- Histone ChIP-seq of macrophageMus musculus C57BL/6 macrophageTarget: H3K79me2Lab: Alexander Hoffmann, UCLAProject: GGR
- Histone ChIP-seq of macrophageMus musculus C57BL/6 macrophageTarget: H3K36me3Lab: Alexander Hoffmann, UCLAProject: GGR
- Control ChIP-seq of macrophageMus musculus C57BL/6 macrophageLab: Alexander Hoffmann, UCLAProject: GGR
- Control ChIP-seq of macrophageMus musculus C57BL/6 macrophageLab: Alexander Hoffmann, UCLAProject: GGR
- microRNA-seq of adrenal glandMus musculus C57BL/6JxCAST/EiJ adrenal gland tissue femaleLab: Ali Mortazavi, UCIProject: ENCODE
- microRNA-seq of adrenal glandMus musculus C57BL/6JxCAST/EiJ adrenal gland tissue maleLab: Ali Mortazavi, UCIProject: ENCODE
- microRNA-seq of adrenal glandMus musculus C57BL/6JxCAST/EiJ adrenal gland tissue female (2 months)Lab: Ali Mortazavi, UCIProject: ENCODE
- microRNA-seq of adrenal glandMus musculus C57BL/6JxCAST/EiJ adrenal gland tissue male (2 months)Lab: Ali Mortazavi, UCIProject: ENCODE
- microRNA-seq of adrenal glandMus musculus C57BL/6JxCAST/EiJ adrenal gland tissue female (14 days)Lab: Ali Mortazavi, UCIProject: ENCODE
- microRNA-seq of mucosa of descending colonHomo sapiens mucosa of descending colon tissue male adult (40 years)Lab: Ali Mortazavi, UCIProject: ENCODE
- Mint-ChIP-seq of activated CD8-positive, naive alpha-beta T cellHomo sapiens activated CD8-positive, naive alpha-beta T cell male adult (42 years)Target: H3K27acLab: Bradley Bernstein, BroadProject: ENCODE
- Mint-ChIP-seq of activated CD8-positive, naive alpha-beta T cellHomo sapiens activated CD8-positive, naive alpha-beta T cell male adult (42 years)Target: H3K9me3Lab: Bradley Bernstein, BroadProject: ENCODE
- Mint-ChIP-seq of activated CD8-positive, naive alpha-beta T cellHomo sapiens activated CD8-positive, naive alpha-beta T cell male adult (42 years)Target: H3K4me3Lab: Bradley Bernstein, BroadProject: ENCODE
- Control Mint-ChIP-seq of activated CD8-positive, naive alpha-beta T cellHomo sapiens activated CD8-positive, naive alpha-beta T cell male adult (42 years)Lab: Bradley Bernstein, BroadProject: ENCODE
- Mint-ChIP-seq of activated CD8-positive, naive alpha-beta T cellHomo sapiens activated CD8-positive, naive alpha-beta T cell male adult (42 years)Target: H3K36me3Lab: Bradley Bernstein, BroadProject: ENCODE