Matrix – ENCODE

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Showing 27967 results

Assay

Biosample

	TF ChIP-seq	Histone ChIP-seq	DNase-seq	Control ChIP-seq	total RNA-seq	Mint-ChIP-seq	polyA plus RNA-seq	shRNA RNA-seq	ATAC-seq	CRISPR RNA-seq	microRNA-seq	long read RNA-seq	snRNA-seq	snATAC-seq	intact Hi-C	Control eCLIP	RNA microarray	eCLIP	WGBS	DNAme array	PRO-cap	RRBS	RNA Bind-n-Seq	small RNA-seq	ChIA-PET	Control Mint-ChIP-seq	RAMPAGE	genotyping array	scRNA-seq	in situ Hi-C	CAGE	Repli-seq	microRNA counts	siRNA RNA-seq	CRISPRi RNA-seq	RIP-seq	MRE-seq	long read scRNA-seq	Repli-chip	MeDIP-seq	PAS-seq	WGS	Bru-seq	GM DNase-seq	FAIRE-seq	BruChase-seq	RIP-chip	polyA minus RNA-seq	RNA-PET	PRO-seq	BruUV-seq	MS-MS	5C	TAB-seq	dilution Hi-C	iCLIP	DNA-PET	Hi-C	icSHAPE	seqFISH	GRO-cap	SPRITE	5' RLM RACE	MNase-seq	Switchgear	capture Hi-C	icLASER	Circulome-seq
cell line	3345	904	656	956	217	146	236	563	206	470	42	57	2	38	228	295	110	288	21	91	44	103		112	149	25	30	80	16	83	53	107	8	113	77	73	15	2	21	5	10	19	45	46	26	28	32	20	26	22	14	13	13		4	7	6	5	6		4			2	2	2	2
K562	828	20	65	288	62		19	293	64	258	3	4		3	8	167	12	164	1	3	7	1		8	11		1	2		1	9	6	1	50	77	29	2			1		4	2	46	3	2	10	3	6		1	6	2			7	3		2		2			1		1	2
HepG2	848	15	4	100	7		11	270	2	212	2	3		3	3	128	7	124	2	3		2		3	5			2		1	6	6	1				1					3	2		1	2	4	3	2		1		1						2							1
A549	262	87	14	89	11		27		6					2			2		1	2	1	1		9	2			2		6	3	2										1			1			1	3	3
GM12878	213	15	6	33	6		15		2		4	4		3	68		8		2	3		2		6	7		1	2	13	6	6	6	1			14	2			1	1		2		1	2	11	3	2		1	5	2		2		3	1	2		2			1
HCT116	43	17	33	23	17	92	1		17		2	1		7	68		1			2	16	1			34	16				8			1				1						18			2				16	1							4

tissue	478	2199	1664	671	447		415		225		305	310	390	292	109	2	78	2	196	122	141	53		68	1		104	16	24	8	18		101				7	61	1	8	14	26			7				1									1		5
dorsolateral prefrontal cortex	59	188	110	61	120						43	13			2							1																				3																		5
heart	6	81	42	18	21		16		7		25	17	49	17	7		10		10			1		1			2		1				8
adrenal gland	8	40	38	13	26		11		8		23	26	59	15	3	2	2	2	5	5	3	1		2			4	1					2					28
heart left ventricle	16	84	14	17	9		2		15		5	4	54	65	10				4	3	6	1					2						2
liver	42	93	30	29	3		22		8		7		8	8					11	1	5	1		1			2	3	2				7				3

primary cell	87	542	1209	142	653	715	169		88		53	6	1	29	26		96		37	38	25	44		24	61	129	28	42	85	25	30	12	1				39		7	42	13	4	4		4	4		11	4		2				3
CD4-positive, alpha-beta T cell	1	18	162	5	191	6	2		1		1			1	2		1		2						2	1		1
T-cell		11	77	3	50	18	1		7								6		1		7	1			4	3													1
naive thymus-derived CD4-positive, alpha-beta T cell		18	20	3	6	74	9		2		2			2	2				1						2	13				1							3			3
CD14-positive monocyte	2	21	39	5	11	41	8							2	2		3		1					1		8		2			1																	1
CD8-positive, alpha-beta T cell	1	19	45	5	46	6	3		1		2			1	2		3		3						2	1											3			4

whole organisms	1380	3		1370	272		97	105																							19										16	3																					2					1
whole organism	1380	3		1370	268		85	105																							15										15	3																					2					1
carcass					4		12																								4										1

in vitro differentiated cells	63	344	51	71	55	78	26		41		18	17	2	11			7		24	6	9	18		12	2	13	6	4	4	9	1		5				7	1	34		1							1				1		8								3
dendritic cell		11			25				30																				3																																	3
mesenchymal stem cell		55	1	6			2												1			2		1															1															2
motor neuron		18		6	9				10										10											9
endodermal cell	1	8	2	3	3	12	3				2	8		1					2		1	2				2											7		2		1
chondrocyte	1	28	1	5	1	6					1	1		1								3				1

cell-free sample																							216
cell-free sample																							216

organoid	7		2	7		48															5					8
brain	4		2	4		30																				5
nephron	3			3		18																				3
pancreas																					5

technical sample					1							7
technical sample					1							7

Experiment Matrix

Showing 27967 results