Matrix – ENCODE

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Assay

Biosample

	TF ChIP-seq	Histone ChIP-seq	Control ChIP-seq	DNase-seq	total RNA-seq	Mint-ChIP-seq	polyA plus RNA-seq	shRNA RNA-seq	ATAC-seq	CRISPR RNA-seq	microRNA-seq	snRNA-seq	snATAC-seq	Control eCLIP	RNA microarray	eCLIP	WGBS	DNAme array	RRBS	RNA Bind-n-Seq	small RNA-seq	ChIA-PET	long read RNA-seq	Control Mint-ChIP-seq	RAMPAGE	genotyping array	intact Hi-C	scRNA-seq	CAGE	Repli-seq	microRNA counts	siRNA RNA-seq	in situ Hi-C	CRISPRi RNA-seq	RIP-seq	MRE-seq	long read scRNA-seq	Repli-chip	MeDIP-seq	PAS-seq	WGS	Bru-seq	GM DNase-seq	FAIRE-seq	BruChase-seq	RIP-chip	polyA minus RNA-seq	RNA-PET	PRO-cap	PRO-seq	BruUV-seq	MS-MS	5C	TAB-seq	dilution Hi-C	iCLIP	DNA-PET	icSHAPE	seqFISH	GRO-cap	SPRITE	5' RLM RACE	MNase-seq	Switchgear	icLASER	Circulome-seq
cell line	3337	904	943	253	217	146	205	563	206	470	42	2	38	295	110	288	21	91	103		112	149	56	25	30	80	30	16	53	107	8	113	64	77	73	15	2	21	5	10	19	45	46	26	28	32	20	26	25	22	14	13	13		4	7	6	6		4			2	2	2
K562	823	20	281	10	62		19	293	64	258	3		3	167	12	164	1	3	1		8	11	4		1	2	1		9	6	1	50	1	77	29	2			1		4	2	46	3	2	10	3	6	7		1	6	2			7	3	2		2			1		2
HepG2	845	15	94	3	7		11	270	2	212	2		3	128	7	124	2	3	2		3	5	3			2	1		6	6	1		1			1					3	2		1	2	4	3	2			1		1					2
A549	262	87	89	14	11		27		6				2		2		1	2	1		9	2				2			3	2			6								1			1			1	3		3
GM12878	213	15	33	3	6		14		2		4		3		8		2	3	2		6	7	4		1	2	1	13	6	6	1		5		14	2			1	1		2		1	2	11	3	2			1	5	2		2		3	2		2			1
HCT116	43	17	23	16	17	92	1		17		2		7		1			2	1			34	1	16			17				1		8			1						18			2				14	16	1

tissue	478	2199	671	1009	447		415		225		305	390	292	2	78	2	196	122	53		68	1	112		104	16	84	24	18		101		8			7	61	1	8	14	26			7				1											5
dorsolateral prefrontal cortex	59	188	61	56	120						43								1				9				2														3																		5
heart	6	81	18	40	21		16		7		25	49	17		10		10		1		1		6		2			1			8
adrenal gland	8	40	13	36	26		11		8		23	59	15	2	2	2	5	5	1		2		19		4	1	2				2						28
heart left ventricle	16	84	17	10	9		2		15		5	54	65				4	3	1				4		2		10				2
liver	42	93	29	25	3		22		8		7	8	8				11	1	1		1				2	3		2			7					3

primary cell	87	542	142	574	244	715	169		83		53	1	29		96		37	38	44		24	61	6	129	28	42	24	85	30	12	1		19			39		7	42	13	4	4		4	4		11	4	1		2				3
naive thymus-derived CD4-positive, alpha-beta T cell		18	3	16	5	74	9		2		2		2				1					2		13			2									3			3
T-cell		11	3	64	7	18	1		6						6		1		1			4		3														1
CD14-positive monocyte	2	21	5	8		41	8						2		3		1				1			8		2	2		1																		1
naive thymus-derived CD8-positive, alpha-beta T cell				13	2	66	6		3		1		1									1		12
CD4-positive, alpha-beta memory T cell		15	4	5	2	48	7				2		1				1					2		8			1									3			3

whole organisms	1380	3	1370		272		97	105																					19											16	3																					2				1
whole organism	1380	3	1370		268		85	105																					15											15	3																					2				1
carcass					4		12																						4											1

in vitro differentiated cells	63	344	71	48	55	78	26		41		18	2	11		7		24	6	18		12	2	17	13	6	4		4	1		5		9			7	1	34		1							1					1		8							3
dendritic cell		11			25				30																			3																																	3
mesenchymal stem cell		55	6	1			2										1		2		1																	1																2
motor neuron		18	6		9				10								10																9
endodermal cell	1	8	3	2	3	12	3				2		1				2		2				8	2												7		2		1
chondrocyte	1	28	5	1	1	6					1		1						3				1	1

cell-free sample																				216
cell-free sample																				216

organoid	7		7	2		48																		8
brain	4		4	2		30																		5
nephron	3		3			18																		3

technical sample					1																		7
technical sample					1																		7

Experiment Matrix

Showing 25150 results