Summary for ENCSR888GEN
doi:10.17989/ENCSR888GEN
Supersedes ENCSR134DWG
Summary
- Status
- released
- Description
- Reference epigenome for human HepG2 cell line
- Donor diversity
- single
- Assay
- ChIP-seq, RNA-seq, polyA plus RNA-seq, small RNA-seq, whole-genome shotgun bisulfite sequencing, microRNA-seq, DNase-seq, ATAC-seq
- Target
- POLR2AphosphoS5, H3K4me1, H3K27ac, H3K36me3, H3K9me3, H3K27me3, EP300, POLR2A, H3K4me3, CTCF
- Biosample summary
- HepG2 cell line genetically modified (insertion) using CRISPR targeting H. sapiens CTCF, genetically modified (insertion) using CRISPR targeting H. sapiens EP300
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
Experiments in ENCSR888GEN
Experiments
17 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR000AMB | ChIP-seq | H3K36me3 | Homo sapiens HepG2 | Bradley Bernstein, Broad | released | |
| ENCSR000AMO | ChIP-seq | H3K27ac | Homo sapiens HepG2 | Bradley Bernstein, Broad | released | |
| ENCSR000AOL | ChIP-seq | H3K27me3 | Homo sapiens HepG2 | Bradley Bernstein, Broad | released | |
| ENCSR000APV | ChIP-seq | H3K4me1 | Homo sapiens HepG2 | Bradley Bernstein, Broad | released | |
| ENCSR000ATD | ChIP-seq | H3K9me3 | Homo sapiens HepG2 | Bradley Bernstein, Broad | released | |
| ENCSR000BPI | ChIP-seq | POLR2AphosphoS5 | Homo sapiens HepG2 | Richard Myers, HAIB | released | |
| ENCSR000CRX | small RNA-seq | Homo sapiens HepG2 | Thomas Gingeras, CSHL | released | ||
| ENCSR000EEM | ChIP-seq | POLR2A | Homo sapiens HepG2 | Michael Snyder, Stanford | released | |
| ENCSR149XIL | DNase-seq | Homo sapiens HepG2 | John Stamatoyannopoulos, UW | released | ||
| ENCSR181ZGR | RNA-seq | Homo sapiens HepG2 | Eric Lécuyer, IRCM | released | ||
| ENCSR271XMW | ChIP-seq | EP300 | Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens EP300 | Richard Myers, HAIB | released | |
| ENCSR291GJU | ATAC-seq | Homo sapiens HepG2 | Michael Snyder, Stanford | released | ||
| ENCSR575RRX | ChIP-seq | H3K4me3 | Homo sapiens HepG2 | Bradley Bernstein, Broad | released | |
| ENCSR607XFI | ChIP-seq | CTCF | Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CTCF | Richard Myers, HAIB | released | |
| ENCSR730NEO | microRNA-seq | Homo sapiens HepG2 | Ali Mortazavi, UCI | released | ||
| ENCSR881XOU | whole-genome shotgun bisulfite sequencing | Homo sapiens HepG2 | Richard Myers, HAIB | released | ||
| ENCSR985KAT | polyA plus RNA-seq | Homo sapiens HepG2 | Brenton Graveley, UConn | released |
Control experiments
5 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR055XHN | input library | Homo sapiens HepG2 | Bradley Bernstein, Broad | released | |
| ENCSR000BLG | input library | Homo sapiens HepG2 | Richard Myers, HAIB | released | |
| ENCSR000EEN | IgG | Homo sapiens HepG2 | Michael Snyder, Stanford | released | |
| ENCSR239QGH | input library | Homo sapiens HepG2 | Richard Myers, HAIB | released | |
| ENCSR693GOR | wild type | Homo sapiens HepG2 | Richard Myers, HAIB | released |