Summary for ENCSR769ZAH
doi:10.17989/ENCSR769ZAH
Summary
- Status
- released
- Description
- Reference epigenome for human GM23338 cell line
- Donor diversity
- single
- Assay
- ChIP-seq, polyA plus RNA-seq, RNA-seq, small RNA-seq, microRNA-seq, DNase-seq, ATAC-seq
- Target
- POLR2AphosphoS5, H3K4me1, H3K27ac, H3K36me3, H3K27me3, H3K4me3, CTCF
- Biosample summary
- GM23338 cell line
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
Experiments in ENCSR769ZAH
Experiments
13 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR004SUL | DNase-seq | Homo sapiens GM23338 originated from GM23248 | John Stamatoyannopoulos, UW | released | ||
| ENCSR236YPE | ChIP-seq | H3K36me3 | Homo sapiens GM23338 originated from GM23248 | Bradley Bernstein, Broad | released | |
| ENCSR249YGG | ChIP-seq | H3K4me1 | Homo sapiens GM23338 originated from GM23248 | Bradley Bernstein, Broad | released | |
| ENCSR369NGL | ChIP-seq | POLR2AphosphoS5 | Homo sapiens GM23338 originated from GM23248 | Richard Myers, HAIB | released | |
| ENCSR386RIJ | ChIP-seq | H3K27me3 | Homo sapiens GM23338 originated from GM23248 | Bradley Bernstein, Broad | released | |
| ENCSR657DYL | ChIP-seq | H3K4me3 | Homo sapiens GM23338 originated from GM23248 | Bradley Bernstein, Broad | released | |
| ENCSR722POQ | small RNA-seq | Homo sapiens GM23338 originated from GM23248 | Thomas Gingeras, CSHL | released | ||
| ENCSR729ENO | ChIP-seq | H3K27ac | Homo sapiens GM23338 originated from GM23248 | Bradley Bernstein, Broad | released | |
| ENCSR748GVH | polyA plus RNA-seq | Homo sapiens GM23338 originated from GM23248 | Barbara Wold, Caltech | released | ||
| ENCSR932ZMX | ChIP-seq | CTCF | Homo sapiens GM23338 originated from GM23248 | Richard Myers, HAIB | released | |
| ENCSR938LSP | RNA-seq | Homo sapiens GM23338 originated from GM23248 | Thomas Gingeras, CSHL | released | ||
| ENCSR958UOC | microRNA-seq | Homo sapiens GM23338 originated from GM23248 | Ali Mortazavi, UCI | released | ||
| ENCSR485TLP | ATAC-seq | Homo sapiens GM23338 | Michael Snyder, Stanford | released |
Control experiments
3 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR773IYZ | input library | Homo sapiens GM23338 originated from GM23248 | Bradley Bernstein, Broad | released | |
| ENCSR447FVP | input library | Homo sapiens GM23338 originated from GM23248 | Richard Myers, HAIB | released | |
| ENCSR655HDE | input library | Homo sapiens GM23338 originated from GM23248 | Richard Myers, HAIB | released |