1. Experiments
  2. ChIP-seq
  3. Homo sapiens
  4. HEK293

Experiment summary for ENCSR000EUZ

doi:10.17989/ENCSR000EUZ

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
TRIM28
Biosample summary
Homo sapiens HEK293
Biosample Type
cell line
Replication type
isogenic
Description
TRIM28 ChIP-seq on human HEK293
Nucleic acid type
DNA
Fragmentation methods
see document
Controls

Attribution

ENCODE2 project
Lab
Peggy Farnham, USC
Award
U54HG004558 (Michael Snyder, Stanford)
Project
ENCODE
Date submitted
December 6, 2010
Date released
October 29, 2011
Annotation (gkmsvm-model)
Submitter comment
Fastq files ENCFF000WYV and ENCFF000WYW contain reads of mixed lengths. Read lengths followed by respective number of reads: ENCFF000WYV (32, 21047886), (36, 48358172); ENCFF000WYW (32, 41799054), (36, 49579320).
Tags
Search for all Experiment with internal tag RegulomeDB_1_0Search for all Experiment with internal tag RegulomeDB_2_0Search for all Experiment with internal tag RegulomeDB_2_1Search for all Experiment with internal tag ENCYCLOPEDIAv2Search for all Experiment with internal tag ENCYCLOPEDIAv1Search for all Experiment with internal tag RegulomeDB_2_2

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Antibody
Library
11Homo sapiens HEK293 cell lineENCBS479AAAENCAB000AIEENCLB920PRJ
21Homo sapiens HEK293 cell lineENCBS264HQLENCAB000AIEENCLB870LTI

Files

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File format
Output type
Replicates

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