Experiment summary for ENCSR000BGC

Superseded by ENCSR331HPA

Summary

Status
archived
Assay
ChIP-seq (TF ChIP-seq)
Target
GABPA
Biosample summary
Homo sapiens GM12878
Biosample Type
cell line
Replication type
isogenic
Description
GABPA ChIP-seq protocol PCR2x on human GM12878
Nucleic acid type
DNA
Lysis method
see document
Extraction method
see document
Fragmentation methods
see document
Size selection method
see document
Strand specificity
Non-strand-specific
Controls

Attribution

ENCODE2 project
Lab
Richard Myers, HAIB
Award
U54HG004576 (Richard Myers, HAIB)
Project
ENCODE
Date released
July 18, 2011
Submitter comment
Fastq file ENCFF000NWM contains reads of mixed lengths. Read lengths followed by respective number of reads: (32, 30362970), (36, 27958912)
Tags
Search for all Experiment with internal tag ENCYCLOPEDIAv4

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Antibody
Library
21GM12878 cell lineENCBS110ENCENCAB000AGRENCLB559JCA
11GM12878 cell lineENCBS110ENCENCAB000AGRENCLB559JBZ