1. Experiments
  2. ChIP-seq
  3. Homo sapiens
  4. SK-N-MC

Experiment summary for ENCSR000BGB

doi:10.17989/ENCSR000BGB

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
FOXP2
Biosample summary
Homo sapiens SK-N-MC
Biosample Type
cell line
Replication type
isogenic
Description
FOXP2 ChIP-seq protocol PCR2x on human SK-N-MC.
Nucleic acid type
DNA
Fragmentation methods
see document
Controls

Attribution

ENCODE2 project
Lab
Richard Myers, HAIB
Award
U54HG004576 (Richard Myers, HAIB)
Project
ENCODE
Date submitted
July 18, 2011
Date released
July 18, 2011
Submitter comment
ChIP-seq against FOXP2 using SK-N-MC cell line which was previously described as a neuroepithelioma (ATCC HTB-10). However recent evidence reveals it is Ewing's Sarcoma (www.ncbi.nlm.nih.gov/pubmed/15548687, www.ncbi.nlm.nih.gov/biosample/3151999, www.ncbi.nlm.nih.gov/pubmed/25453903). ENCODE4 pipeline run failed at chip.align step.
Tags
Search for all Experiment with internal tag RegulomeDB_1_0Search for all Experiment with internal tag RegulomeDB_2_0Search for all Experiment with internal tag RegulomeDB_2_1Search for all Experiment with internal tag ENCYCLOPEDIAv2Search for all Experiment with internal tag ENCYCLOPEDIAv1Search for all Experiment with internal tag RegulomeDB_2_2

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Antibody
Library
11Homo sapiens SK-N-MC cell lineENCBS426ENCENCAB000AGQENCLB559JUZ
21Homo sapiens SK-N-MC cell lineENCBS426ENCENCAB000AGQENCLB559KAY

Files

Filter files

File format
Output type
Replicates

No files to display.