Summary for ENCSR838VOB
doi:10.17989/ENCSR838VOB
Summary
- Status
- released
- Description
- Reference epigenome for human Caco-2 cell line
- Donor diversity
- single
- Assay
- ChIP-seq, RNA-seq, microRNA-seq, DNase-seq
- Target
- H3K4me1, H3K36me3, H3K27me3, H3K9me3, H3K4me3, CTCF
- Biosample summary
- Homo sapiens Caco-2
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
Experiments in ENCSR838VOB
Experiments
9 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR000DQK | ChIP-seq | H3K36me3 | Homo sapiens Caco-2 | John Stamatoyannopoulos, UW | released | |
| ENCSR000DQL | ChIP-seq | H3K27me3 | Homo sapiens Caco-2 | John Stamatoyannopoulos, UW | released | |
| ENCSR000DQM | ChIP-seq | H3K4me3 | Homo sapiens Caco-2 | John Stamatoyannopoulos, UW | released | |
| ENCSR961IOA | ChIP-seq | CTCF | Homo sapiens Caco-2 | Bradley Bernstein, Broad | released | |
| ENCSR030HFV | DNase-seq | Homo sapiens Caco-2 | John Stamatoyannopoulos, UW | released | ||
| ENCSR061UOM | ChIP-seq | H3K4me1 | Homo sapiens Caco-2 | Michael Snyder, Stanford | released | |
| ENCSR401WUV | ChIP-seq | H3K9me3 | Homo sapiens Caco-2 | Michael Snyder, Stanford | released | |
| ENCSR469WPG | RNA-seq | Homo sapiens Caco-2 | Barbara Wold, Caltech | released | ||
| ENCSR638OIX | microRNA-seq | Homo sapiens Caco-2 | Ali Mortazavi, UCI | released |
Control experiments
3 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR000DQJ | input library | Homo sapiens Caco-2 | John Stamatoyannopoulos, UW | released | |
| ENCSR436HPW | input library | Homo sapiens Caco-2 | Bradley Bernstein, Broad | released | |
| ENCSR269OND | input library | Homo sapiens Caco-2 | Michael Snyder, Stanford | released |