Summary for ENCSR295OVP
doi:10.17989/ENCSR295OVP
Summary
- Status
- released
- Description
- Reference epigenome for mouse neural tube (14.5 day embryonic)
- Donor diversity
- composite
- Assay
- whole-genome shotgun bisulfite sequencing, ATAC-seq, polyA plus RNA-seq, ChIP-seq, microRNA-seq
- Target
- H3K36me3, H3K4me3, H3K27ac, H3K9ac, H3K27me3, H3K9me3, H3K4me1, H3K4me2
- Biosample summary
- B6NCrl neural tube tissue
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
Experiments in ENCSR295OVP
Experiments
12 experiments
Accession | Assay | Target | Donors | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|---|
| ENCSR700QBR | ATAC-seq | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap neural tube tissue embryo (14.5 days) | Bing Ren, UCSD | released | ||
| ENCSR223FDX | ChIP-seq | H3K9me3 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap neural tube tissue embryo (14.5 days) | Bing Ren, UCSD | released | |
| ENCSR977DCO | ChIP-seq | H3K4me1 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap neural tube tissue embryo (14.5 days) | Bing Ren, UCSD | released | |
| ENCSR776QRL | ChIP-seq | H3K36me3 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap neural tube tissue embryo (14.5 days) | Bing Ren, UCSD | released | |
| ENCSR093BYV | ChIP-seq | H3K4me3 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap neural tube tissue embryo (14.5 days) | Bing Ren, UCSD | released | |
| ENCSR511LWL | ChIP-seq | H3K9ac | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap neural tube tissue embryo (14.5 days) | Bing Ren, UCSD | released | |
| ENCSR099BYW | ChIP-seq | H3K27me3 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap neural tube tissue embryo (14.5 days) | Bing Ren, UCSD | released | |
| ENCSR579RZO | ChIP-seq | H3K4me2 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap neural tube tissue embryo (14.5 days) | Bing Ren, UCSD | released | |
| ENCSR265NBM | ChIP-seq | H3K27ac | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap neural tube tissue embryo (14.5 days) | Bing Ren, UCSD | released | |
| ENCSR498DIP | microRNA-seq | ENCDO956IXV | Mus musculus strain B6NCrl neural tube tissue embryo (14.5 days) | Ali Mortazavi, UCI | released | ||
| ENCSR450UMG | whole-genome shotgun bisulfite sequencing | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap neural tube tissue embryo (14.5 days) | Joe Ecker, Salk | released | ||
| ENCSR928OXI | polyA plus RNA-seq | ENCDO956IXV | Mus musculus strain B6NCrl neural tube tissue embryo (14.5 days) | Barbara Wold, Caltech | released |
Control experiments
1 control experiment
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR254WNU | input library | Mus musculus strain B6NTac;B6NCrl/Lap neural tube tissue embryo (14.5 days) | Bing Ren, UCSD | released |