Experiment summary for ENCSR450UMG
doi:10.17989/ENCSR450UMG
Summary
- Status
- released
- Assay
- whole-genome shotgun bisulfite sequencing (WGBS)
- Biosample summary
- Mus musculus strain B6NTac;B6NCrl/Lap neural tube tissue embryo (14.5 days)
- Biosample Type
- tissue
- Replication type
- isogenic
- Description
- Whole genome bisulfite-seq on embryonic 14.5 day mouse neural tube
- Nucleic acid type
- DNA
- Size range
- 180-500
- Extraction method
- QIAGEN DNeasy Blood & Tissue Kit
- Fragmentation methods
- shearing (Covaris S2)
- Size selection method
- Sera-mag SpeedBeads
- Platform
- Illumina HiSeq 2500
Attribution
ENCODE3 project
- Lab
- Joe Ecker, Salk
- Award
- U54HG006997 (Bing Ren, UCSD)
- Project
- ENCODE
- External resources
- Aliases
- joe-ecker:E14_5_NT
- Date submitted
- March 10, 2014
- Date released
- June 30, 2014
- Reference Epigenome
- ENCSR295OVP
- Organism Development Series
- ENCSR485TKJ
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 1 | 1 | Mus musculus strain B6NTac;B6NCrl/Lap mixed sex embryo (14.5 days) neural tube tissue | ENCBS013AAA | ENCLB315NYL |
| 2 | 1 | Mus musculus strain B6NTac;B6NCrl/Lap mixed sex embryo (14.5 days) neural tube tissue | ENCBS025AAA | ENCLB229VRK |
| 2 | 2 | Mus musculus strain B6NTac;B6NCrl/Lap mixed sex embryo (14.5 days) neural tube tissue | ENCBS025AAA | ENCLB940BKV |
| 1 | 2 | Mus musculus strain B6NTac;B6NCrl/Lap mixed sex embryo (14.5 days) neural tube tissue | ENCBS013AAA | ENCLB661IPD |