Summary for ENCSR194DQD
doi:10.17989/ENCSR194DQD
Supersedes ENCSR289LSP
Summary
- Status
- released
- Description
- Reference epigenome for human endothelial cell of umbilical vein
- Donor diversity
- composite
- Assay
- DNase-seq, polyA plus RNA-seq, ChIP-seq, RNA-seq, microRNA-seq
- Target
- H3K27me3, POLR2AphosphoS5, H3K4me1, H3K27ac, H3K36me3, POLR2A, CTCF, H3K9me3, H3K4me3
- Biosample summary
- endothelial cell of umbilical vein primary cell
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
Experiments in ENCSR194DQD
Experiments
13 experiments
Accession | Assay | Target | Donors | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|---|
| ENCSR000AKL | ChIP-seq | H3K4me1 | ENCDO560UMK, ENCDO466MPW | Homo sapiens endothelial cell of umbilical vein newborn | Bradley Bernstein, Broad | released | |
| ENCSR000ALB | ChIP-seq | H3K27ac | ENCDO466MPW, ENCDO560UMK | Homo sapiens endothelial cell of umbilical vein newborn | Bradley Bernstein, Broad | released | |
| ENCSR000ATB | ChIP-seq | H3K9me3 | ENCDO466MPW, ENCDO560UMK | Homo sapiens endothelial cell of umbilical vein newborn | Bradley Bernstein, Broad | released | |
| ENCSR000BQB | ChIP-seq | POLR2A | ENCDO560UMK, ENCDO930BXC | Homo sapiens endothelial cell of umbilical vein newborn | Richard Myers, HAIB | released | |
| ENCSR000BQC | ChIP-seq | POLR2AphosphoS5 | ENCDO560UMK, ENCDO930BXC | Homo sapiens endothelial cell of umbilical vein newborn | Richard Myers, HAIB | released | |
| ENCSR000COZ | polyA plus RNA-seq | ENCDO341AAA, ENCDO930BXC | Homo sapiens endothelial cell of umbilical vein male newborn and newborn | Thomas Gingeras, CSHL | released | ||
| ENCSR000DLW | ChIP-seq | CTCF | ENCDO560UMK | Homo sapiens endothelial cell of umbilical vein newborn | Vishwanath Iyer, UTA | released | |
| ENCSR000DVM | ChIP-seq | H3K36me3 | ENCDO930BXC | Homo sapiens endothelial cell of umbilical vein newborn | John Stamatoyannopoulos, UW | released | |
| ENCSR000DVO | ChIP-seq | H3K27me3 | ENCDO930BXC | Homo sapiens endothelial cell of umbilical vein newborn | John Stamatoyannopoulos, UW | released | |
| ENCSR000EOQ | DNase-seq | ENCDO930BXC | Homo sapiens endothelial cell of umbilical vein newborn | John Stamatoyannopoulos, UW | released | ||
| ENCSR578QSO | ChIP-seq | H3K4me3 | ENCDO560UMK | Homo sapiens endothelial cell of umbilical vein newborn | Bradley Bernstein, Broad | released | |
| ENCSR993JMV | RNA-seq | ENCDO628LXZ | Homo sapiens endothelial cell of umbilical vein male newborn | Barbara Wold, Caltech | released | ||
| ENCSR076EJO | microRNA-seq | ENCDO628LXZ | Homo sapiens endothelial cell of umbilical vein male newborn | Ali Mortazavi, UCI | released |
Control experiments
4 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR000ALG | input library | Homo sapiens endothelial cell of umbilical vein newborn | Bradley Bernstein, Broad | released | |
| ENCSR000BOB | input library | Homo sapiens endothelial cell of umbilical vein newborn | Richard Myers, HAIB | released | |
| ENCSR000DLX | input library | Homo sapiens endothelial cell of umbilical vein newborn | Vishwanath Iyer, UTA | released | |
| ENCSR000DVL | input library | Homo sapiens endothelial cell of umbilical vein newborn | John Stamatoyannopoulos, UW | released |