Experiment summary for ENCSR578QSO
doi:10.17989/ENCSR578QSO
Summary
- Status
- released
- Assay
- ChIP-seq (Histone ChIP-seq)
- Target
- H3K4me3
- Biosample summary
- Homo sapiens endothelial cell of umbilical vein newborn
- Biosample Type
- primary cell
- Replication type
- isogenic
- Nucleic acid type
- DNA
- Size range
- 200-600
- Fragmentation methods
- shearing (Covaris generic) [1-1]sonication (generic) [2-1]
- Platform
- Illumina HiSeq 2500
- Controls
Attribution
ENCODE3 project
- Lab
- Bradley Bernstein, Broad
- Award
- U54HG006991 (Bradley Bernstein, Broad)
- Project
- ENCODE
- External resources
- Aliases
- bradley-bernstein:Project Element 532
- Date submitted
- April 11, 2016
- Date released
- November 16, 2016
- Reference Epigenome
- ENCSR194DQD
- Annotation (physical modeling)
- Submitter comment
- As of August 2022, the donors associated with the biosamples in this dataset were changed from ENCDO551FXN to ENCDO466MPW and ENCDO560UMK. See PMID:32728101.
- Registry of cCREs
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Antibody | Library |
---|---|---|---|---|---|
1 | 1 | Homo sapiens newborn endothelial of umbilical vein primary cell | ENCBS741UNQ | ENCAB582RSV | ENCLB305XAQ |
2 | 1 | Homo sapiens newborn endothelial of umbilical vein primary cell | ENCBS859WPH | ENCAB582RSV | ENCLB204VWR |