Functional Characterization Experiment summary for ENCSR818BYM
doi:10.17989/ENCSR818BYM
Summary
- Status
- released
- Assay
- Flow-FISH CRISPR screen
- Biosample summary
- Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple loci
- Biosample Type
- cell line
- Perturbation type
- CRISPRi
- Tiling modality
- peak tiling
- Examined loci
- HDAC6 (55-65%)
- CRISPR screen readout
- PrimeFlow
- Replication type
- isogenic
- Nucleic acid type
- DNA
- Size range
- 200-210
- Platform
- Illumina HiSeq 4000
Attribution
ENCODE4 project
- Lab
- Jesse Engreitz, Stanford
- Award
- UM1HG009436 (Will Greenleaf, Stanford)
- Project
- ENCODE
- Aliases
- jesse-engreitz:CRISPRiFlowFISH-K562-HDAC6-binD_funccharexp
- Date released
- January 7, 2021
- Functional Characterization Series
- ENCSR541HXR
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Library |
|---|---|---|---|---|---|
| 1 | 2 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS816RPV | ENCGM924EDC, ENCGM912CXW | ENCLB787RDD |
| 2 | 2 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS241WGO | ENCGM924EDC, ENCGM912CXW | ENCLB323MUA |
| 1 | 1 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS816RPV | ENCGM924EDC, ENCGM912CXW | ENCLB145DSS |
| 4 | 2 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS913GVO | ENCGM924EDC, ENCGM912CXW | ENCLB469KRL |
| 3 | 2 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS427DBB | ENCGM924EDC, ENCGM912CXW | ENCLB481HFO |
| 3 | 3 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS427DBB | ENCGM924EDC, ENCGM912CXW | ENCLB011FVQ |
| 4 | 4 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS913GVO | ENCGM924EDC, ENCGM912CXW | ENCLB485NUY |
| 3 | 4 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS427DBB | ENCGM924EDC, ENCGM912CXW | ENCLB766OSC |
| 4 | 1 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS913GVO | ENCGM924EDC, ENCGM912CXW | ENCLB023XLN |
| 3 | 1 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS427DBB | ENCGM924EDC, ENCGM912CXW | ENCLB982JLQ |
| 2 | 1 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS241WGO | ENCGM924EDC, ENCGM912CXW | ENCLB677RSB |
| 4 | 3 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS913GVO | ENCGM924EDC, ENCGM912CXW | ENCLB347HAF |