Functional Characterization Experiment summary for ENCSR719TQI
doi:10.17989/ENCSR719TQI
Summary
- Status
- released
- Assay
- Flow-FISH CRISPR screen
- Biosample summary
- Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple loci
- Biosample Type
- cell line
- Perturbation type
- CRISPRi
- Tiling modality
- peak tiling
- Examined loci
- HDAC6 (90-100%)
- CRISPR screen readout
- PrimeFlow
- Replication type
- isogenic
- Nucleic acid type
- DNA
- Size range
- 200-210
- Platform
- Illumina HiSeq 4000
Attribution
ENCODE4 project
- Lab
- Jesse Engreitz, Stanford
- Award
- UM1HG009436 (Will Greenleaf, Stanford)
- Project
- ENCODE
- Aliases
- jesse-engreitz:CRISPRiFlowFISH-K562-HDAC6-binF_funccharexp
- Date released
- January 7, 2021
- Functional Characterization Series
- ENCSR541HXR
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Library |
|---|---|---|---|---|---|
| 4 | 3 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS460PEB | ENCGM924EDC, ENCGM912CXW | ENCLB783NBJ |
| 4 | 4 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS460PEB | ENCGM924EDC, ENCGM912CXW | ENCLB516UVS |
| 4 | 1 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS460PEB | ENCGM924EDC, ENCGM912CXW | ENCLB725PAD |
| 2 | 2 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS876TWK | ENCGM924EDC, ENCGM912CXW | ENCLB648QQJ |
| 3 | 3 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS999POJ | ENCGM924EDC, ENCGM912CXW | ENCLB368GIH |
| 1 | 1 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS337ETM | ENCGM924EDC, ENCGM912CXW | ENCLB501ABA |
| 3 | 1 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS999POJ | ENCGM924EDC, ENCGM912CXW | ENCLB857TBF |
| 4 | 2 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS460PEB | ENCGM924EDC, ENCGM912CXW | ENCLB924KUX |
| 1 | 2 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS337ETM | ENCGM924EDC, ENCGM912CXW | ENCLB161WJV |
| 2 | 1 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS876TWK | ENCGM924EDC, ENCGM912CXW | ENCLB383HPN |
| 3 | 2 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS999POJ | ENCGM924EDC, ENCGM912CXW | ENCLB467AZP |
| 3 | 4 | Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) | ENCBS999POJ | ENCGM924EDC, ENCGM912CXW | ENCLB309PTX |