Experiment summary for ENCSR963ALV
doi:10.17989/ENCSR963ALV
Summary
- Status
- released
- Assay
- DNase-seq
- Biosample summary
- Homo sapiens neural progenitor cell originated from H9
- Biosample Type
- in vitro differentiated cells
- Replication type
- isogenic
- Description
- DNase-seq on 5 day embryonic female human neural progenitor cell
- Nucleic acid type
- DNA
- Platform
- Illumina HiSeq 2500
Attribution
ENCODE3 project
- Lab
- John Stamatoyannopoulos, UW
- Award
- U54HG007010 (John Stamatoyannopoulos, UW)
- Project
- ENCODE
- External resources
- References
- Date submitted
- June 30, 2015
- Date released
- June 14, 2016
- Reference Epigenome
- ENCSR372BDU
- Annotation (gkmsvm-model)
- Annotation (ChromBPNet-model)
- Submitter comment
- This experiment previously contained replicates 3 & 4 (ENCBS946LBI & ENCBS752TEN). Those samples were determined to be mis-annotated. This issue has been rectified and those data are found in ENCSR360XIS, as of Feb 23, 2018.
- Registry of cCREs
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
---|---|---|---|---|
1 | 1 | Homo sapiens female embryo (5 days) neural progenitor in vitro differentiated cells originated from H9 | ENCBS018TPT | ENCLB057UTE |
2 | 1 | Homo sapiens female embryo (5 days) neural progenitor in vitro differentiated cells originated from H9 | ENCBS044KWE | ENCLB449QVJ |