Summary for ENCSR372BDU
doi:10.17989/ENCSR372BDU
Summary
- Status
- released
- Description
- Reference epigenome for human H9-derived neural progenitor cell
- Donor diversity
- single
- Assay
- ChIP-seq, RNA-seq, small RNA-seq, microRNA-seq, DNase-seq
- Target
- H3K4me1, H3K27ac, H3K36me3, H3K27me3, H3K9me3, H3K4me3, CTCF
- Biosample summary
- Homo sapiens neural progenitor cell originated from H9
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
Experiments in ENCSR372BDU
Experiments
11 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR125NBL | ChIP-seq | CTCF | Homo sapiens neural progenitor cell originated from H9 | Bradley Bernstein, Broad | released | |
| ENCSR828LSC | small RNA-seq | Homo sapiens neural progenitor cell originated from H9 | Thomas Gingeras, CSHL | released | ||
| ENCSR139PIA | ChIP-seq | H3K27me3 | Homo sapiens neural progenitor cell originated from H9 | Bradley Bernstein, Broad | released | |
| ENCSR573CWZ | ChIP-seq | H3K36me3 | Homo sapiens neural progenitor cell originated from H9 | Bradley Bernstein, Broad | released | |
| ENCSR274OIJ | ChIP-seq | H3K4me1 | Homo sapiens neural progenitor cell originated from H9 | Bradley Bernstein, Broad | released | |
| ENCSR661MUS | ChIP-seq | H3K4me3 | Homo sapiens neural progenitor cell originated from H9 | Bradley Bernstein, Broad | released | |
| ENCSR449AXO | ChIP-seq | H3K27ac | Homo sapiens neural progenitor cell originated from H9 | Bradley Bernstein, Broad | released | |
| ENCSR256KTR | ChIP-seq | H3K9me3 | Homo sapiens neural progenitor cell originated from H9 | Bradley Bernstein, Broad | released | |
| ENCSR244ISQ | RNA-seq | Homo sapiens neural progenitor cell originated from H9 | Thomas Gingeras, CSHL | released | ||
| ENCSR963ALV | DNase-seq | Homo sapiens neural progenitor cell originated from H9 | John Stamatoyannopoulos, UW | released | ||
| ENCSR511YYU | microRNA-seq | Homo sapiens neural progenitor cell originated from H9 | Ali Mortazavi, UCI | released |
Control experiments
1 control experiment
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR603SVD | input library | Homo sapiens neural progenitor cell originated from H9 | Bradley Bernstein, Broad | released |