Experiment summary for ENCSR856IKQ
doi:10.17989/ENCSR856IKQ
Summary
- Status
- archived
- Assay
- ChIP-seq (Histone ChIP-seq)
- Target
- H3K9me3
- Biosample summary
- Homo sapiens neuroepithelial stem cell stably expressing HES5 originated from H9
- Biosample Type
- in vitro differentiated cells
- Replication type
- isogenic
- Nucleic acid type
- DNA
- Library starting quantity
- 220ng
- Size range
- 300-1000 [1-1]200-600 [2-1]200-600 [2-2]
- Fragmentation methods
- none [1-1]shearing (Covaris generic) [2-1]shearing (Covaris generic) [2-2]
- Platform
- Illumina HiSeq 2000, Illumina HiSeq 2500
- Controls
Attribution
ENCODE3 project
- Lab
- Bradley Bernstein, Broad
- Award
- U54HG006991 (Bradley Bernstein, Broad)
- Project
- ENCODE
- Aliases
- bradley-bernstein:Project Element 979
- Date submitted
- February 19, 2015
- Date released
- May 20, 2016
- Reference Epigenome
- ENCSR978RSW
- Submitter comment
- Cross-correlation metrics are too poor to permit further analysis.
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 1 | 1 | Homo sapiens female embryo (5 days) neuroepithelial stem in vitro differentiated cells stably expressing C-terminal eGFP-tagged HES5 originated from H9 | ENCBS363SWF | ENCGM252BLF | ENCAB778TBN | ENCLB559HDW |
| 2 | 1 | Homo sapiens female embryo (5 days) neuroepithelial stem in vitro differentiated cells stably expressing C-terminal eGFP-tagged HES5 originated from H9 | ENCBS435FHS | ENCGM252BLF | ENCAB000APY | ENCLB297PCK |
| 2 | 2 | Homo sapiens female embryo (5 days) neuroepithelial stem in vitro differentiated cells stably expressing C-terminal eGFP-tagged HES5 originated from H9 | ENCBS435FHS | ENCGM252BLF | ENCAB000APY | ENCLB746XDH |