Experiment summary for ENCSR526PZM
doi:10.17989/ENCSR526PZM
Summary
- Status
- released
- Assay
- ChIP-seq (Histone ChIP-seq)
- Target
- H3K36me3
- Biosample summary
- Homo sapiens SK-N-MC
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- ChIP-seq against H3K36me3 using SK-N-MC cell line which was previously described as a neuroepithelioma (ATCC HTB-10). However recent evidence reveals it is Ewing's Sarcoma (www.ncbi.nlm.nih.gov/pubmed/15548687, www.ncbi.nlm.nih.gov/biosample/3151999, www.ncbi.nlm.nih.gov/pubmed/25453903).
- Nucleic acid type
- DNA
- Library starting quantity
- 91.3ng
- Size range
- 200-600
- Fragmentation methods
- sonication (generic)
- Platform
- Illumina HiSeq 2000, Illumina HiSeq 2500
- Controls
Attribution
ENCODE3 project
- Lab
- Bradley Bernstein, Broad
- Award
- U54HG006991 (Bradley Bernstein, Broad)
- Project
- ENCODE
- External resources
- Aliases
- bradley-bernstein:Project Element 872
- Date submitted
- October 26, 2014
- Date released
- January 5, 2017
- Reference Epigenome
- ENCSR394KIB
- Submitter comment
- Cross-correlation metrics are too poor to permit further analysis.
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Antibody | Library |
|---|---|---|---|---|---|
| 1 | 1 | Homo sapiens SK-N-MC cell line | ENCBS556HGY | ENCAB000AQF | ENCLB841KOB |
| 2 | 1 | Homo sapiens SK-N-MC cell line | ENCBS203EZT | ENCAB000AQF | ENCLB306XER |