1. Experiments
  2. ChIP-seq
  3. Homo sapiens
  4. K562

Experiment summary for ENCSR000EWL

doi:10.17989/ENCSR000EWL

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
E2F4
Biosample summary
Homo sapiens K562
Biosample Type
cell line
Replication type
isogenic
Description
E2F4 ChIP-seq on human K562
Nucleic acid type
DNA
Fragmentation methods
see document
Controls

Attribution

ENCODE2 project
Lab
Peggy Farnham, USC
Award
U54HG004558 (Michael Snyder, Stanford)
Project
ENCODE
Date submitted
December 6, 2010
Date released
October 29, 2011
Annotation (gkmsvm-model)
Annotation (physical modeling)
Annotation (BPNet-model)
Submitter comment
Fastq file ENCFF000YMI contains reads of mixed lengths. Read lengths followed by respective number of reads: (27, 4593325), (35, 2690976). Peak calling failed for hg19, and efforts to understand the problem are ongoing.
Tags
Search for all Experiment with internal tag RegulomeDB_1_0Search for all Experiment with internal tag RegulomeDB_2_0Search for all Experiment with internal tag RegulomeDB_2_1Search for all Experiment with internal tag ENCYCLOPEDIAv2Search for all Experiment with internal tag ENCYCLOPEDIAv1Search for all Experiment with internal tag RegulomeDB_2_2

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Antibody
Library
11Homo sapiens K562 cell lineENCBS667AAAENCAB000AFVENCLB229CKW
21Homo sapiens K562 cell lineENCBS667AAAENCAB000AFVENCLB502XKE

Files

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Output type
Replicates

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