Experiment summary for ENCSR000EWL

Summary

Status
released
Assay
ChIP-seq
Target
E2F4
Biosample summary
Homo sapiens K562
Biosample Type
cell line
Replication type
isogenic
Description
E2F4 ChIP-seq on human K562
Nucleic acid type
DNA
Lysis method
see document
Extraction method
see document
Fragmentation method
see document
Size selection method
see document
Strand specificity
Non-strand-specific
Controls

Attribution

ENCODE2 project
Lab
Peggy Farnham, USC
Award
U54HG004558 (Michael Snyder, Stanford)
Project
ENCODE
Date submitted
December 6, 2010
Date released
October 29, 2011
Submitter comment
Fastq file ENCFF000YMI contains reads of mixed lengths. Read lengths followed by respective number of reads: (27, 4593325), (35, 2690976). Peak calling failed for hg19, and efforts to understand the problem are ongoing.
Tags
Search for all Experiment with internal tag ENCYCLOPEDIAv4

Isogenic replicates

Isogenic replicateTechnical replicateSummaryBiosampleAntibodyLibrary
11K562 cell lineENCBS667AAAENCAB000AFVENCLB229CKW
21K562 cell lineENCBS667AAAENCAB000AFVENCLB502XKE