1. Experiments
  2. ChIP-seq
  3. Homo sapiens
  4. HCT116

Experiment summary for ENCSR000EUU

doi:10.17989/ENCSR000EUU

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
POLR2A
Biosample summary
Homo sapiens HCT116
Biosample Type
cell line
Replication type
isogenic
Description
POLR2A ChIP-seq on human HCT-116
Nucleic acid type
DNA
Fragmentation methods
see document
Controls

Attribution

ENCODE2 project
Lab
Peggy Farnham, USC
Award
U54HG004558 (Michael Snyder, Stanford)
Project
ENCODE
Date submitted
December 6, 2010
Date released
October 29, 2011
Reference Epigenome
ENCSR361KMF 
Annotation (gkmsvm-model)
Submitter comment
The data quality is too poor for peak analysis for hg19. Not enough peaks can be called. The GRCh38 data should also be used with caution.
Tags
Search for all Experiment with internal tag RegulomeDB_1_0Search for all Experiment with internal tag RegulomeDB_2_0Search for all Experiment with internal tag RegulomeDB_2_1Search for all Experiment with internal tag ENCYCLOPEDIAv2Search for all Experiment with internal tag ENCYCLOPEDIAv1Search for all Experiment with internal tag RegulomeDB_2_2

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Antibody
Library
11Homo sapiens HCT116 cell lineENCBS409MTTENCAB000AOCENCLB594VMH
21Homo sapiens HCT116 cell lineENCBS409MTTENCAB000AOCENCLB990PEE

Files

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Output type
Replicates

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